PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D09G1180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 374aa MW: 40915.8 Da PI: 6.8944 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.3 | 1.3e-08 | 203 | 250 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Gh_D09G1180 203 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 250 8*************************9....888999999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.07E-15 | 197 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.30E-8 | 197 | 254 | No hit | No description |
PROSITE profile | PS50888 | 14.373 | 199 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-14 | 200 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-6 | 203 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-8 | 205 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MESKAGTTET RSNITASDGD QVAALESLQF TDEFHRLILA PPSDNATSLA ALLELPASRA 60 LELLHSPASA KLIAAPAPSF EALKGNFLFP SNTTLIDQAA RSSVFAGGVN NTNNKSNAPE 120 TTSNNSTLNL EKAVKSEPAE TESSQPLVSD PAVEKRNFKR KDREKKAKGS TKKSKTAVND 180 SSDGPEKLPY VHVRARRGEA TDSHSLAERA RREKINARMK LLQELVPGCN KISGTALVLD 240 EIINHVQSLQ NQVEFLSMRL AAVNPRTDFN LNSIFTTESG SLPDSNFPSM VMPLIWPGVQ 300 VNGNKQQHQQ QWQFDARQQP VWGREVCNNY ITPENSLLSY DSSVNSATLH ANQTENGAMK 360 SEEVPTVRLV ERLL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2546 | 0.0 | boll| ovule| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016671507.1 | 0.0 | PREDICTED: transcription factor bHLH48-like isoform X1 | ||||
Swissprot | Q3EAI1 | 2e-88 | BH060_ARATH; Transcription factor bHLH60 | ||||
TrEMBL | A0A1U8HZS6 | 0.0 | A0A1U8HZS6_GOSHI; transcription factor bHLH48-like isoform X1 | ||||
STRING | EOY09403 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2576 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 2e-89 | bHLH family protein |
Publications ? help Back to Top | |||
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