PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G1104

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 504aa MW: 55502.2 Da PI: 6.5029

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G1104	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8.4e-07	263	284	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Gh_D09G1104 263 FCTICGKGFKRDANLRMHMRGH 284 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.55E-5	261	286	No hit	No description
PROSITE profile	PS50157	12.03	262	289	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0026	262	284	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	264	284	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.6E-6	264	313	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	53	311	344	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	26	349	371	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MDLKERVCGE LQKEVPKGAS FTKFNTQHQQ KWEDPSSTSD YSTRIEPPFQ AFNQTSQTQS 60 LLLCNNQIKV PMQDGSVNDL LQASKIQDWD PSAMLNNLSF LGQKIHQLQD LVYLIIGRKG 120 QVLGRPDELL VQQQQLVTAD LTSIIVQLIS TAGSLLPSVK QTLSAATTSL GQCGEFGGVV 180 FPSSAQGLND GVQPQNAGGS KVSEPPNSVD ITSNNGNEQS NHIIEEHELK DEEDAEEGEN 240 LLPGTSEILQ LEKEEILAAH THFCTICGKG FKRDANLRMH MRGHGDEYKT PGALAKPTKE 300 SSSEPTIIKR YSCPYAGCKR NKDHKKFQPL KTILCVKNHY KRTHCDKSYI CSRCNTKKFS 360 VIADLKTHEK HCGKDKWLCS CGTTFSRKDK LFGHITLFQG HTPAIPSDEI KAAPAGTSDG 420 ATNKVGSVNF NLSYVSSESE VQSSSMDIKG GIDDAVGYFS PLSFDTCNFG GFHEFPRPPF 480 DDSESSFAFL LSRSCNYSQK SGEE

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MDLKERVCGE LQKEVPKGAS FTKFNTQHQQ KWEDPSSTSD YSTRIEPPFQ AFNQTSQTQS  60
LLLCNNQIKV PMQDGSVNDL LQASKIQDWD PSAMLNNLSF LGQKIHQLQD LVYLIIGRKG  120
QVLGRPDELL VQQQQLVTAD LTSIIVQLIS TAGSLLPSVK QTLSAATTSL GQCGEFGGVV  180
FPSSAQGLND GVQPQNAGGS KVSEPPNSVD ITSNNGNEQS NHIIEEHELK DEEDAEEGEN  240
LLPGTSEILQ LEKEEILAAH THFCTICGKG FKRDANLRMH MRGHGDEYKT PGALAKPTKE  300
SSSEPTIIKR YSCPYAGCKR NKDHKKFQPL KTILCVKNHY KRTHCDKSYI CSRCNTKKFS  360
VIADLKTHEK HCGKDKWLCS CGTTFSRKDK LFGHITLFQG HTPAIPSDEI KAAPAGTSDG  420
ATNKVGSVNF NLSYVSSESE VQSSSMDIKG GIDDAVGYFS PLSFDTCNFG GFHEFPRPPF  480
DDSESSFAFL LSRSCNYSQK SGEE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20209	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots (e.g. root tips and lateral roots), leaves, flowers (e.g. stigma, sepal, anther, and filament), stems, siliques and cotyledons. {ECO:0000269\|PubMed:23935008}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016671636.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
Refseq	XP_016671637.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
Refseq	XP_016671638.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
Refseq	XP_016671639.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
Swissprot	Q9C8N5	0.0	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A1U8I5Z6	0.0	A0A1U8I5Z6_GOSHI; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
STRING	Gorai.006G131700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6977	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]