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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_D09G1045 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
SRS |
| Protein Properties |
Length: 356aa MW: 36993.7 Da PI: 7.7864 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D09G1045 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 217.5 | 2.9e-67 | 138 | 296 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskkel 100
+++CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrerq ++aa ++ a s+ +++ +k++r +++++++s+t++s++++ +++
Gh_D09G1045 138 SATTCQDCGNQAKKDCSHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMAAAVTTAGAGSSgSTSGAKKPRL-ITSQNTTTSHTSTSNTTP-RSF 233
5689*********************************************99999888877777636666777776.588888889999888865.577 PP
DUF702 101 etss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
+tss lP +v+++avf+cvrv++v+dg++e+aYq+ v+igGhvfkG+LydqG+e
Gh_D09G1045 234 DTSSsnqdagfketLPGQVRAPAVFKCVRVTAVEDGDDEFAYQAIVKIGGHVFKGFLYDQGVE 296
7777799******************************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 356 aa
Download sequence Send
to blast |
MGMVGLRDFV VVAPASFNHH HHHHHHHHTQ DPIMSNDQIS GPSASTALGV GVGVFPLLTA 60
APCLAPLNVE DPDLFNNNGR TKLSGMQLWQ DQNSSPHNYL KKPSSFPDSN NSSSMNLIQS 120
SGGGGMGDGE SGGSGSSSAT TCQDCGNQAK KDCSHRRCRT CCKSRGFDCP THVKSTWVPA 180
ARRRERQLMA AAVTTAGAGS SGSTSGAKKP RLITSQNTTT SHTSTSNTTP RSFDTSSSNQ 240
DAGFKETLPG QVRAPAVFKC VRVTAVEDGD DEFAYQAIVK IGGHVFKGFL YDQGVEGRDG 300
FPNISELHLG GGSGSGGNGG GGRNGGSSSS PVLDPSEVYA ATGGCLLGSS YGNPIN
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 2e-71 | Lateral root primordium (LRP) protein-related |
