PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0991
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 233aa    MW: 26695 Da    PI: 7.1694
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0991genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-082470347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT  Ed+ + ++  +++ g   +W++Ia+ ++ g+++k++  +++++
      Gh_D09G0991 24 HWTRLEDKVFEQCLVLFPEGisdRWEKIAEQIP-GKSAKEVEQHFHML 70
                     5********************************.***********976 PP
2Myb_DNA-binding46.68.1e-15123167347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
      Gh_D09G0991 123 PWTEEEHKLFLIGLQKFGKGDWRSISRNVVVTRTPTQVASHAQKY 167
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.3E-62173IPR001005SANT/Myb domain
SuperFamilySSF466891.73E-102377IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-52468IPR009057Homeodomain-like
PfamPF002499.4E-82470IPR001005SANT/Myb domain
PROSITE profilePS500906.5282571IPR017877Myb-like domain
CDDcd001671.97E-72571No hitNo description
PROSITE profilePS5129420.829116172IPR017930Myb domain
SuperFamilySSF466896.35E-17118172IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-17119171IPR006447Myb domain, plants
SMARTSM007174.7E-11120170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-11120166IPR009057Homeodomain-like
CDDcd001671.44E-9123168No hitNo description
PfamPF002499.1E-13123167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MYQDNNHCNG DPLFIESVAA ASTHWTRLED KVFEQCLVLF PEGISDRWEK IAEQIPGKSA  60
KEVEQHFHML VYDVYEIDAG RVQVPQYADD SVMLSQGWDS QNQISFVSKS KHHGEGERKK  120
GTPWTEEEHK LFLIGLQKFG KGDWRSISRN VVVTRTPTQV ASHAQKYFLR QSAVKKERKR  180
SSIHDITTVD SKTMDVPVEQ NRGSEPHGMV QQAPQLQQMP HTGHFVGKYG YPM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.68500.0leaf| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016683540.11e-177PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H73e-58DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1U8IZL81e-175A0A1U8IZL8_GOSHI; transcription factor DIVARICATA-like
TrEMBLA0A2P5RX081e-175A0A2P5RX08_GOSBA; Uncharacterized protein
STRINGGorai.006G118200.11e-175(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-84MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]