PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D09G0943 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 228aa MW: 25840 Da PI: 6.5199 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 137.5 | 8.4e-43 | 4 | 135 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdi.ykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 + GfrF Pt+eelv++yL+++++g + +++ vi+ ++i y++ePwdLpk +k++ ++w++F++r++++a+g r++r+t+sgyWkatg+ v+s Gh_D09G0943 4 AIGFRFFPTEEELVSFYLRNQLQGMRQDMHLVIPVLNIfYDLEPWDLPKlageLCKGDVEQWFYFTPRQEREARGGRASRTTASGYWKATGSPGFVYS 101 57***************************889****873678******656765566888************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++g+kkt+vfykg+ap+g+kt+W m+eyr+ Gh_D09G0943 102 SDDRVIGMKKTMVFYKGKAPNGRKTKWKMNEYRA 135 ********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-45 | 3 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.821 | 3 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-22 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MEVAIGFRFF PTEEELVSFY LRNQLQGMRQ DMHLVIPVLN IFYDLEPWDL PKLAGELCKG 60 DVEQWFYFTP RQEREARGGR ASRTTASGYW KATGSPGFVY SSDDRVIGMK KTMVFYKGKA 120 PNGRKTKWKM NEYRAIEALS DPYVAAPPKL RHEFSLCRVY VASSSSRAFD RRPLEAHNNA 180 ATTSGGASGT SHAGGDHYNP AEASEDEFWE LVNNLEEHAI GWGQINEI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-30 | 1 | 167 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-30 | 1 | 167 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-30 | 1 | 167 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-30 | 1 | 167 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-30 | 1 | 167 | 18 | 173 | NAC domain-containing protein 19 |
3swm_B | 4e-30 | 1 | 167 | 18 | 173 | NAC domain-containing protein 19 |
3swm_C | 4e-30 | 1 | 167 | 18 | 173 | NAC domain-containing protein 19 |
3swm_D | 4e-30 | 1 | 167 | 18 | 173 | NAC domain-containing protein 19 |
3swp_A | 4e-30 | 1 | 167 | 18 | 173 | NAC domain-containing protein 19 |
3swp_B | 4e-30 | 1 | 167 | 18 | 173 | NAC domain-containing protein 19 |
3swp_C | 4e-30 | 1 | 167 | 18 | 173 | NAC domain-containing protein 19 |
3swp_D | 4e-30 | 1 | 167 | 18 | 173 | NAC domain-containing protein 19 |
4dul_A | 4e-30 | 1 | 167 | 15 | 170 | NAC domain-containing protein 19 |
4dul_B | 4e-30 | 1 | 167 | 15 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.3801 | 0.0 | ovule |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ130042 | 0.0 | KJ130042.1 Gossypium barbadense NAC protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016671853.1 | 1e-172 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 6e-85 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A1U8I6L2 | 1e-171 | A0A1U8I6L2_GOSHI; NAC domain-containing protein 90-like | ||||
STRING | Gorai.006G113000.1 | 1e-171 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 1e-85 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
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