PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0883
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 546aa    MW: 58516.6 Da    PI: 9.8919
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0883genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.6e-20411460255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr ++ +grW AeIrd +   g r r++lg+f+taeeAa+a++ a+++l+g
  Gh_D09G0883 411 SYRGVRKRP-WGRWSAEIRDrV---G-RCRHWLGTFDTAEEAARAYDTAARRLRG 460
                  69*******.**********55...2.59************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.1150.103.6E-2849104IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2
SuperFamilySSF533831.43E-5462255IPR015424Pyridoxal phosphate-dependent transferase
PfamPF002022.6E-1068125IPR005814Aminotransferase class-III
Gene3DG3DSA:3.40.640.104.4E-26105205IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
PfamPF002022.6E-38131275IPR005814Aminotransferase class-III
Gene3DG3DSA:3.90.1150.103.6E-28210276IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2
CDDcd000185.41E-30410469No hitNo description
SuperFamilySSF541716.47E-21411468IPR016177DNA-binding domain
PfamPF008476.4E-13411460IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-29411468IPR001471AP2/ERF domain
PROSITE profilePS5103222.84411468IPR001471AP2/ERF domain
SMARTSM003805.7E-32411474IPR001471AP2/ERF domain
PRINTSPR003673.5E-10412423IPR001471AP2/ERF domain
PRINTSPR003673.5E-10434450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008483Molecular Functiontransaminase activity
GO:0030170Molecular Functionpyridoxal phosphate binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MGSLKLFPSF SLSVSPATNL RRPLNNGRVN ASLNMDVEAP NPLKLKSNGS NEVIEKDAKF  60
IVGTYARAPV VLSSGKGCKL YDPEGREFLD CAAGIAVNAL GHGDPDWLRA VTEQASILTH  120
VSNAYYSIPQ VQCGLGRTGY LWAHEAYGVF PDMMTLAKPL AGGLPIGATL VSERVASAIA  180
HGDHGSTFAG SPFVCSAAIC VFNKISNPSF LSSVLKKGDY MKELLNQKLG GNPHVKEIRG  240
WGLMIGIELD VSASPLVDAC RNSGLLVLTA GKGNVILPDA KSERGGERLK VRNGIELITS  300
FLIHFHLIHN PVSLLVIHLK GRSYPPFYTE FSDSGNGIRT YLGTQPVLDG IAAVVGQHVL  360
FGTKTNPTTS NSQGDGDRAS TEETSSFVSA SHRFGSNKRN VNAAAASMQK SYRGVRKRPW  420
GRWSAEIRDR VGRCRHWLGT FDTAEEAARA YDTAARRLRG SKAKTNFEIP STLPLSSPCS  480
TSSSSTEAKK KVKSKGNKAQ RKCEVVTSVV HLFSSGGNEG KGSEELELKL GMGLNNKPSM  540
PSNDVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2e54_A1e-33602922376Acetylornithine aminotransferase
2ord_A1e-336029214388Acetylornithine aminotransferase
2ord_B1e-336029214388Acetylornithine aminotransferase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.42610.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found at highest levels in nodules, confined to the infected cells.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the biosynthesis of citrulline.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO048666e-72ARGD_ALNGL; Acetylornithine aminotransferase, mitochondrial
TrEMBLA0A0D2NQ201e-160A0A0D2NQ20_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.006G107500.11e-161(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.15e-20ERF family protein
Publications ? help Back to Top
  1. Guan C, et al.
    Nitrogen metabolism in actinorhizal nodules of Alnus glutinosa: expression of glutamine synthetase and acetylornithine transaminase.
    Plant Mol. Biol., 1996. 32(6): p. 1177-84
    [PMID:9002618]