PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0881
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 680aa    MW: 75200.5 Da    PI: 4.3991
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0881genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.8e-10527570146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r rW++++ el++ a++q+G++ +++I + ++ gR++ q+k+++ +
      Gh_D09G0881 527 RARWSKQDTELFYGAIRQFGPD-FSLIQQLFP-GRSRHQIKLKFKN 570
                      569*****************88.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159634.4E-25523602No hitNo description
Gene3DG3DSA:1.10.10.603.0E-6525571IPR009057Homeodomain-like
PROSITE profilePS5129310.632525576IPR017884SANT domain
SMARTSM007171.3E-8526574IPR001005SANT/Myb domain
CDDcd001678.14E-7529570No hitNo description
SuperFamilySSF466895.01E-10529577IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MEESDFFQDE PVVTQARAGA KFQPKFKRKA KDGTSGSIPS KPPVILKDVA TTVASAAINA  60
VQVVEPDNVV DDSKGSQVIN PSQVTVTDSL LAEVAVPNCC NDTNSSFERT VGENADLYFG  120
LDCLDPLITQ SSTNDGDNRT DHERTGTEFQ EAGVFPDVDT PDIMFGMTTA SGMRTEKFKP  180
KPRLQTSVPA SPATVVDWVM HPATARFVPS ETAFKEGSIP DFPSDHVPNC APVDLGSFIP  240
PDPSTSECPV NEELANLAVA SNAGVGLSGD VPDMPTEVIS TIMERNASLV SNPSRESKQS  300
STGGEVNGKG EARKQLREQV TTPHNVDDLE DGTCNDDGLA AELPSYYAID EDKDDNDDDE  360
FNVEHASPKR RTSKRSKKPV NESEKPPRKR RKANEAQKNK KANEASDNPE KEQRKKFSHS  420
TRRKRRFVDE SLLTTPEDEI DFAKVALKDL ILLADYKERI AKKEAKALKE PLTDQSTQKR  480
LNEENARDEE SSIASEQDQG IMDDQVNGSA QSDIYFNYQT LMTKEPRARW SKQDTELFYG  540
AIRQFGPDFS LIQQLFPGRS RHQIKLKFKN EERRSPFKLS EALASRASDH SYFAKVIEQL  600
QQVSGADPEG HGDVSNDLTC EEEEVTPENN EEAAKSKQDE DVAVGDQEAD ITQDHSSLKS  660
NEMDDEDDDD EILNSYQSAF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368390KRRTSKRSKKPVNESEKPPRKRR
2369375RRTSKRS
3376391KKPVNESEKPPRKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.233880.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485033.10.0PREDICTED: transcription factor TFIIIB component B'' homolog isoform X1
TrEMBLA0A0D2NQ130.0A0A0D2NQ13_GOSRA; Uncharacterized protein
STRINGGorai.006G107300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-37MYB_related family protein