PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G0857

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 256aa MW: 27705.2 Da PI: 7.2913

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G0857	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	111	133	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++sF++ L H+ +H Gh_D09G0857 111 HECKTCNRSFPSFQALGGHMASH 133 78******************999 PP
2	zf-C2H2	13.5	0.00021	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Gh_D09G0857 169 HECSICGSEFTSGQALGGHMRRH 191 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	8.3E-14	110	135	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.24E-9	111	133	No hit	No description
SMART	SM00355	0.019	111	133	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.785	111	138	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	113	133	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.24E-9	164	191	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.0E-4	164	191	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.019	169	191	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.8E-11	169	192	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.868	169	196	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	171	191	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MQAQAVFVGS DHHLHQALIM KGKRTKRQRS PSLFGVAVTS SSSNGGDGVV EEYNSISSPT 60 TSDEIYGSTE EEEEMANCLI MLAQSDGPKR STVEAKFKIA TKTNKGELYV HECKTCNRSF 120 PSFQALGGHM ASHKKPKGAI AEQKRPLVLA VNDAVIALRV SNKKGNKIHE CSICGSEFTS 180 GQALGGHMRR HRTASAAAAS NQDAMNGDDD IKPRNITPLD LNLPAPEDDV RDSMFEFGTP 240 QQAIVFSTPA LVDCHY

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.6122	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269\|PubMed:9132053}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016671932.1	0.0	PREDICTED: zinc finger protein ZAT5-like
Swissprot	Q681X4	2e-67	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A1U8I116	0.0	A0A1U8I116_GOSHI; zinc finger protein ZAT5-like
TrEMBL	A0A2P5XPN2	0.0	A0A2P5XPN2_GOSBA; Uncharacterized protein
STRING	Gorai.006G104800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5862	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	3e-67	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]