PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0684
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 343aa    MW: 37643.6 Da    PI: 7.2855
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0684genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.000212352721254
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++ +++  L++l+ +      +K + a++L +++e+Ik L
  Gh_D09G0684 235 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEHIKFL 272
                  677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.128223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.55E-5233276No hitNo description
Gene3DG3DSA:4.10.280.101.7E-7233281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-10233285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAEELHAGIC EGTWWKSSKT MLSGFPSSSP TEIADLGISF GWATNMADDI EARSSNNKEK  60
HQQAADSHNN GSSVFIDSSL KMMDFDLSST PDCNQSFQQE PVAMDSALLQ GLLFEPDAQA  120
QQHSLNFNNR SINHMPAGAT YGANANGILS PPWPKLAPFV RPSLPKQLPS SLRLPQSQVL  180
LQTFENKLNC PRPTIETNTK QVRNLASVMK KGSGEPPLKR PRIETPLPLP TFKVRKEKLG  240
DRITALQQLV SPFGKTDTAS VLHETIEHIK FLHDQVNVLS TPYVKQAAVS IPQGIDHGLK  300
DTEGSKQDLR SRGLCLVPIS TTFTVANETT ADFWTPAFVG TLR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472303e-52EF147230.1 Populus trichocarpa clone WS01229_K02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016672201.10.0PREDICTED: transcription factor bHLH112-like
TrEMBLA0A1U8I1T00.0A0A1U8I1T0_GOSHI; transcription factor bHLH112-like
STRINGGorai.006G085000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2465034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.37e-52bHLH family protein