PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G0629

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 947aa MW: 107033 Da PI: 8.2416

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G0629	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	164	2.6e-51	29	146	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 ++e k+rwl+++ei+aiL n++ + + +++ + pksg++++++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++nptf rrc Gh_D09G0629 29 MEEaKSRWLRPNEIHAILCNHKYFPIYMKPVNLPKSGTIVFFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPTFVRRC 126 55669******************************************************************************************* PP CG-1 99 ywlLeeelekivlvhylevk 118 ywlL+++le+ivlvhy+e++ Gh_D09G0629 127 YWLLDKSLEHIVLVHYRETQ 146 ***************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.449	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.4E-75	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.5E-45	31	144	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	6.6E-4	374	475	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.4E-11	388	475	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.26E-13	565	699	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.0E-13	575	700	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.61E-13	579	697	No hit	No description
PROSITE profile	PS50297	10.577	582	637	IPR020683	Ankyrin repeat-containing domain
SMART	SM00015	280	748	770	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.504	749	778	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	69	801	823	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.218	802	831	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0022	824	846	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.908	825	849	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	5.3E-4	829	846	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	14	904	926	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.187	906	934	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 947 aa Download sequence Send to blast
MDVGGSSPLV GSEIHGFRTL ADLDVQTMME EAKSRWLRPN EIHAILCNHK YFPIYMKPVN 60 LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNP 120 TFVRRCYWLL DKSLEHIVLV HYRETQESQG SPATPGNSNS SSITDQSTPL NVMEEFDSGA 180 GNAYYEEPGN SVDVRNHEMR LHEINTLEWD ELLVTNDSND STISRRGNKL VSILSNTPCS 240 FAKLLTHFIL MADNNSCFQQ LNQTTGNGFL NYGGPISADN LSTEISMLVN LVEPVAQSNN 300 TYFNTPTTVC NTISSSQINP NVQQKDSIAT GAGDPLDLLI NDGLNSQGSF GKWVNYTITE 360 SPVSGDSMQE SSVSSVQDSF TSPEHIFTIT EVSHEWAYST EKTKILVTGF FHQAYQHLVK 420 SNLVCVCGDV CNPAEIIQVG VYRCVLPQHS PGLVNLYMSL DGHKPISQVL SFEYRVPLSH 480 DPLVPVEDES RWKEFQLQMR LAYLLFSTSK NLNILSGKVS PNTLKEAKNF AQKTSSISNS 540 WTYLLKSIEE NRASFTQAKD GLFEIALKNR LKDWLLERII EGSKITDFDT EGLGVLHLCA 600 ILGYTWAIHL FSWSGLSLDF RDKRGWTALH WAAYYGRQVH FTSFLTFICL PEKMVAALLS 660 AGAKSYLVTD PTTQNPNGCT AADLASLKGY DGLAAYLSEE ALVAQFNEMA VAGNASGSLK 720 TSRTEVTHTD TLNEDELYLK DSLAAYRTAA DAAARIQNAF RAHSLKIRTK AIESSTPEDE 780 ARSIVAAMKI QHAFRNFETK RKMAAAARIQ YRFRTWKIRK EFLNLRHQAT KIQAAFRGLL 840 VRRQYRKITW SVGVLEKAIL RWRLKRKGLR GLQINTVDTV TEQRPESDTE EDFYRTSRRQ 900 AEQRVEKAVV RVQAMFRSKK AQEDYRRMKL ACDQAMLEYQ SLRNPTS

Sequence ? help Back to Top

Protein Sequence Length: 947 aa Download sequence Send to blast

MDVGGSSPLV GSEIHGFRTL ADLDVQTMME EAKSRWLRPN EIHAILCNHK YFPIYMKPVN  60
LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNP  120
TFVRRCYWLL DKSLEHIVLV HYRETQESQG SPATPGNSNS SSITDQSTPL NVMEEFDSGA  180
GNAYYEEPGN SVDVRNHEMR LHEINTLEWD ELLVTNDSND STISRRGNKL VSILSNTPCS  240
FAKLLTHFIL MADNNSCFQQ LNQTTGNGFL NYGGPISADN LSTEISMLVN LVEPVAQSNN  300
TYFNTPTTVC NTISSSQINP NVQQKDSIAT GAGDPLDLLI NDGLNSQGSF GKWVNYTITE  360
SPVSGDSMQE SSVSSVQDSF TSPEHIFTIT EVSHEWAYST EKTKILVTGF FHQAYQHLVK  420
SNLVCVCGDV CNPAEIIQVG VYRCVLPQHS PGLVNLYMSL DGHKPISQVL SFEYRVPLSH  480
DPLVPVEDES RWKEFQLQMR LAYLLFSTSK NLNILSGKVS PNTLKEAKNF AQKTSSISNS  540
WTYLLKSIEE NRASFTQAKD GLFEIALKNR LKDWLLERII EGSKITDFDT EGLGVLHLCA  600
ILGYTWAIHL FSWSGLSLDF RDKRGWTALH WAAYYGRQVH FTSFLTFICL PEKMVAALLS  660
AGAKSYLVTD PTTQNPNGCT AADLASLKGY DGLAAYLSEE ALVAQFNEMA VAGNASGSLK  720
TSRTEVTHTD TLNEDELYLK DSLAAYRTAA DAAARIQNAF RAHSLKIRTK AIESSTPEDE  780
ARSIVAAMKI QHAFRNFETK RKMAAAARIQ YRFRTWKIRK EFLNLRHQAT KIQAAFRGLL  840
VRRQYRKITW SVGVLEKAIL RWRLKRKGLR GLQINTVDTV TEQRPESDTE EDFYRTSRRQ  900
AEQRVEKAVV RVQAMFRSKK AQEDYRRMKL ACDQAMLEYQ SLRNPTS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016672591.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A1U8I2X2	0.0	A0A1U8I2X2_GOSHI; calmodulin-binding transcription activator 5-like
STRING	Gorai.006G079000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]