PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D09G0497 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NF-X1 | ||||||||
Protein Properties | Length: 1079aa MW: 116835 Da PI: 8.243 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 23.9 | 8.7e-08 | 275 | 293 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+++CH G C+pC+ Gh_D09G0497 275 CGRHQCERICHIGACDPCK 293 ******************8 PP | |||||||
2 | zf-NF-X1 | 16.5 | 1.8e-05 | 400 | 414 | 4 | 18 |
zf-NF-X1 4 HkCqklCHeGpCppC 18 H+C + CH G+CppC Gh_D09G0497 400 HRCDQVCHAGNCPPC 414 *************** PP | |||||||
3 | zf-NF-X1 | 18.6 | 3.9e-06 | 493 | 511 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC Gh_D09G0497 493 CGQHSCESLCHSGHCPPCL 511 ******************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 1.91E-6 | 96 | 167 | No hit | No description |
PROSITE profile | PS50016 | 8.867 | 104 | 165 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 107 | 162 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50089 | 9.288 | 107 | 163 | IPR001841 | Zinc finger, RING-type |
CDD | cd06008 | 4.22E-5 | 196 | 258 | No hit | No description |
SMART | SM00438 | 0.023 | 220 | 238 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8 | 222 | 237 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.07E-11 | 265 | 313 | No hit | No description |
SMART | SM00438 | 5.6E-5 | 275 | 294 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.0E-5 | 275 | 293 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.99E-9 | 329 | 372 | No hit | No description |
SMART | SM00438 | 6.8E-4 | 339 | 358 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0016 | 339 | 356 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 6.42E-12 | 387 | 435 | No hit | No description |
SMART | SM00438 | 0.0011 | 397 | 416 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 6.1E-4 | 399 | 414 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 180 | 455 | 489 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 18 | 455 | 466 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.44E-8 | 483 | 526 | No hit | No description |
SMART | SM00438 | 2.0E-4 | 493 | 512 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 9.6E-5 | 493 | 510 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.57E-5 | 540 | 588 | No hit | No description |
SMART | SM00438 | 0.036 | 550 | 568 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.5 | 550 | 567 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.26 | 603 | 633 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.014 | 603 | 618 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.10E-5 | 631 | 680 | No hit | No description |
Pfam | PF01422 | 12 | 635 | 661 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.081 | 642 | 663 | IPR000967 | Zinc finger, NF-X1-type |
Gene3D | G3DSA:3.30.70.330 | 2.7E-5 | 880 | 932 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1079 aa Download sequence Send to blast |
MSFQGRNRSR NPSQSTRQEW VPRGSSSTTT TVESSSTAAS NSTPNVNQTS TRNDSKYRQT 60 GRPTNHRRDR EKGRSETQMA VRKEVDPNLP QLVQEIQDKL IKSTVECMIC YDMVPRSGAI 120 WSCSSCYSIF HLNCIKKWAR APTSVDLVAE KNQGFNWRCP GCQSVQFTSS KEIRYVCFCG 180 KRTDPPSDLY LTPHSCGEPC GKPLEKELGL GSRVMKDELC PHVCVLQCHP GPCPPCKAFA 240 PPRLCPCGKK VITTRCSDRK SVLTCGQRCG KLLECGRHQC ERICHIGACD PCKVLINAPC 300 FCKKKVEVVI CGDMVVKGKV KAEDGIFSCS STCGKKLRCG NHYCAENCHP GPCGDCELMP 360 SKIRSCYCGK TSLQEQRQSC LDPIPTCSET CAKFLPCQVH RCDQVCHAGN CPPCLVLVTQ 420 KCLCGSTSRR VECYKTTLEN ERFTCDKPCG RKKSCGRHRC SERCCPLSNS NSLRSGGWDP 480 HFCQMACGKK LRCGQHSCES LCHSGHCPPC LETIFTDLTC ACGRTSIPPP LPCGTPPPSC 540 QLPCSVPQPC GHSSSHSCHF GDCPPCSVPV AKECIGGHVV LRNLPCGSKD IRCNKLCGKT 600 RQCGLHACGR TCHPAPCDVS SGAEPGVRTS CGQTCGAPRR DCRHTCTAPC HPSAPCPDVR 660 CDFRVTITCS CGRLSATVPC DAGGCTGGFN ADTVFEASII QKLPVPLQPV ESTGKKIPLG 720 QRKLMCDDEC AKLERKRVLA DAFDITPPNL DALYFGENSV TSEVLFDLYR RDPKWVLAVE 780 ERCKFLVLGK NRGTTSGLKV HVFCPMLKDK RDAIRIIAER WKLTISAAGW EPKRFIVVHV 840 TAKSKPPARI IGAKGSTSTG AVHPPVFDPL VDMDPRLVVS FLDLPRESDI SALVLRFGGE 900 CELVWLNDKN ALAVFSDPAR AATAMRRLDH GSIYTGAIAF VQSGGASSAN NAWGGTGPSS 960 AVKANPWKKA VVQELGWKED SWGGDESLGV TSDPGSAWKG KDAPIAASVN RWSVLDSETG 1020 VSSSSGAVRS EDPSKLAGVQ SLSKMDSNAA NSSSAGLLGG GLNGTEPLEV VDDWEKAYE |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.3035 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016672419.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL1-like | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A1U8I9G7 | 0.0 | A0A1U8I9G7_GOSHI; NF-X1-type zinc finger protein NFXL1-like | ||||
STRING | Gorai.006G058600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5955 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |