PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0485
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 281aa    MW: 31803.7 Da    PI: 6.3542
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0485genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-182370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll ++v+++G g+W++ a+  g++Rt+k+c++rw++yl
      Gh_D09G0485 23 KGPWTLEEDSLLTRYVARHGEGHWNLLAKLAGLRRTGKSCRLRWLNYL 70
                     79********************************************97 PP
2Myb_DNA-binding48.71.7e-1576119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
      Gh_D09G0485  76 RGNLTPEEQFLILELHCKWGNR-WSKIAQELP-GRTDNEIKNYWRT 119
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.9271874IPR017930Myb domain
SuperFamilySSF466898.44E-3121117IPR009057Homeodomain-like
SMARTSM007172.9E-152272IPR001005SANT/Myb domain
PfamPF002491.1E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-232477IPR009057Homeodomain-like
CDDcd001672.20E-112570No hitNo description
PROSITE patternPS0017503847IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
SMARTSM007173.9E-1375123IPR001005SANT/Myb domain
PROSITE profilePS5129418.99875125IPR017930Myb domain
PfamPF002492.7E-1476119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2378124IPR009057Homeodomain-like
CDDcd001671.71E-1080119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSSFTKASSS TSCSEEDTEQ LRKGPWTLEE DSLLTRYVAR HGEGHWNLLA KLAGLRRTGK  60
SCRLRWLNYL KPDVKRGNLT PEEQFLILEL HCKWGNRWSK IAQELPGRTD NEIKNYWRTR  120
VQKQARHLKI DANSAAFRNV IRCFWMPGLL QMMKGSSTLP QQVAGLGQQN SDSEQCASSC  180
VSSSESMNNN MSKISEFAEY QTSSFGITDN NEYNTVAKDC YYVDNSSCYG METINLPSTS  240
AVGDFMTADC HMADNNWVND GFADGIWSMG ELWELPLKGN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26211255108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.66931e-137leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO310733761e-137
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2013047e-90HQ201304.1 Gossypium hirsutum MYB146 (MYB146) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016672489.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A1U8I9N30.0A0A1U8I9N3_GOSHI; transcription factor MYB108-like
STRINGGorai.006G060300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-74myb domain protein 116