PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0427
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 575aa    MW: 62350.5 Da    PI: 6.1233
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0427genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3611.7e-1102115753374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  ++++e+A a+s+g++   +++Larl +la+ +g++ qRl+ +++ AL++rl++    + ++ p++e     s+e++aa++l++++sP++k+++++aNq
  Gh_D09G0427 211 QTIMEVASAISEGKTDVLNEILARLAQLANAKGNSEQRLTECMLLALKSRLNS----VESSPPVTELF---SKEHAAATQLLYDLSPCFKLGFMAANQ 301
                  789*************************************************9....55444555554...99************************* PP

         GRAS 101 aIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  aIl+a+  +   +++H+iDfdi+qG+Q+ +Ll+aL++R +g p +++iT +++  +g  e+l+++g++L+ +Ae+lgv+++f+v+ + +l+dl+ e+L
  Gh_D09G0427 302 AILDATLDQpscNKLHVIDFDIGQGGQYTTLLHALSERGRGNPaMIKITCIAD--NGGDERLKTVGSKLSLVAERLGVRLKFTVVPSLKLSDLSRESL 397
                  *****998878899************************9555549********..77***************************8888********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                   ++ +E laVn++++l+r++desvs+e++rde+L+ vk+l P vv++veqe+++n+++F+ r+ ea+ yy alf+s+e++++re++er+kvE+  l r
  Gh_D09G0427 398 GCELDEPLAVNFAFKLYRMPDESVSVENPRDELLRRVKRLAPCVVTLVEQEINTNTAPFASRVGEAVGYYGALFESIESTFGRENSERVKVEEG-LLR 494
                  **********************************************************************************************.889 PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +i n vaceg++r+er+e ++kWr+r+++aGF+  plse++a+++++ l+  ++ g++v+ee+g + +gW++r+L+++SaWr
  Gh_D09G0427 495 KIANSVACEGRDRVERCEVFGKWRARMSMAGFELKPLSESVAESIRTRLNC-GNPGFTVKEENGGISFGWMGRTLTVASAWR 575
                  *************************************************75.55***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.653183556IPR005202Transcription factor GRAS
PfamPF035145.8E-108211575IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MTSGFSGGGT EFYGRIAGGS VSNSGSMSNN QPTAPYGTHG IFMDPTSQIV NRAAPSFVGK  60
RTRADFNNHG LNNLYPRPRY GVPVLQQLRP QQLPLGISSG ATIQAVNPGF SSAQYLNLVQ  120
ARVVQAQDPE KKMMNQLQEL EKQLLDDDNE EEGDAVSVIT NSNSEWSETI QTLISSSSPN  180
KPIATSPTSS TTSSSSSTSS VASPVSLCPK QTIMEVASAI SEGKTDVLNE ILARLAQLAN  240
AKGNSEQRLT ECMLLALKSR LNSVESSPPV TELFSKEHAA ATQLLYDLSP CFKLGFMAAN  300
QAILDATLDQ PSCNKLHVID FDIGQGGQYT TLLHALSERG RGNPAMIKIT CIADNGGDER  360
LKTVGSKLSL VAERLGVRLK FTVVPSLKLS DLSRESLGCE LDEPLAVNFA FKLYRMPDES  420
VSVENPRDEL LRRVKRLAPC VVTLVEQEIN TNTAPFASRV GEAVGYYGAL FESIESTFGR  480
ENSERVKVEE GLLRKIANSV ACEGRDRVER CEVFGKWRAR MSMAGFELKP LSESVAESIR  540
TRLNCGNPGF TVKEENGGIS FGWMGRTLTV ASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-4423257526375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.24890.0boll| ovule| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5907633e-32JX590763.1 Gossypium hirsutum clone NBRI_GE25751 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484125.10.0PREDICTED: scarecrow-like protein 8 isoform X2
SwissprotQ9FYR71e-173SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0D2SSA80.0A0A0D2SSA8_GOSRA; Uncharacterized protein
STRINGGorai.006G050200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-165SCARECROW-like 8