PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D09G0319 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27743.9 Da PI: 5.4125 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.9 | 5.5e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + + G ++W+t+++ g+ R++k+c++rw +yl Gh_D09G0319 14 RGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56.2 | 7.9e-18 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++T+ E++++++++++lG++ W++Ia++++ gRt++++k++w Gh_D09G0319 67 RGAFTESEEDQIIQLHARLGNR-WSKIASHFP-GRTDNEIKNHWS 109 89********************.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.486 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.39E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-6 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.42E-5 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.135 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.54E-11 | 69 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRTV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGAF TESEEDQIIQ LHARLGNRWS KIASHFPGRT DNEIKNHWST RIKKKLKLLG 120 LDPVTHKPIE KVEKNDGDSS NKSNGDDQQQ GIKLDDDEKV EGIELSLDET NDLFNSYQML 180 CESFDLDSWL NQDAANNTCS SSYSMEESSN KSSTGETNST IGEDSLKQWV DSVDSFLSWD 240 SFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 12 | 116 | 5 | 108 | B-MYB |
1gv2_A | 3e-27 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 9e-27 | 12 | 116 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-27 | 12 | 116 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-27 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-27 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. Strongest expression in the stem. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016672712.1 | 1e-180 | PREDICTED: myb-related protein 315-like | ||||
Swissprot | P81394 | 2e-82 | MYB15_ANTMA; Myb-related protein 315 | ||||
TrEMBL | A0A1U8I396 | 1e-179 | A0A1U8I396_GOSHI; myb-related protein 315-like | ||||
STRING | Gorai.006G037500.1 | 1e-178 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 2e-84 | myb domain protein 40 |
Publications ? help Back to Top | |||
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