PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G0213

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 418aa MW: 45431.1 Da PI: 8.2676

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G0213	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.1	2e-29	139	197	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+rs ed +++++tYeg+Hnh+ Gh_D09G0213 139 YDGCQWRKYGQKISKGNPCPRAYYRCTVApDCPVRKQVQRSFEDMSILVTTYEGSHNHP 197 59************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-30	123	199	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	130	199	IPR003657	WRKY domain
PROSITE profile	PS50811	28.082	133	199	IPR003657	WRKY domain
SMART	SM00774	2.8E-35	138	198	IPR003657	WRKY domain
Pfam	PF03106	1.7E-25	140	197	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MMLEQIQKNY KSLQSRFFEI IKQGSAIEEG SEEPELVSLS LGRSSPTGSK KDDKKTTICS 60 KTEEDDHNKS GLTLGLDSKF QLSTEIVSNP SHENSSEEAS KVQKRPSSGV DHKEGVEQKS 120 QVKRARVSVR TRCDAPTMYD GCQWRKYGQK ISKGNPCPRA YYRCTVAPDC PVRKQVQRSF 180 EDMSILVTTY EGSHNHPIPV SATTMASTTA AAASMLLSGS STSQPALSTE INGLNFSSSL 240 HDNSRLPSYP TITLDLTGSP SSSSSLNYFN RFPTNCPATP RFPSTNLNFS SPLVSNESFT 300 QENYFYQQSL TDTLTKAITS DPSFRSLISA AISSLVGHSS AKHGDGTDQK GDSFSQNLMQ 360 AAINSQSLND SSLRGSSYFK GFESSSSRIG SSNQPSSLSF SSFNAASTLA FDNKQGKN

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MMLEQIQKNY KSLQSRFFEI IKQGSAIEEG SEEPELVSLS LGRSSPTGSK KDDKKTTICS  60
KTEEDDHNKS GLTLGLDSKF QLSTEIVSNP SHENSSEEAS KVQKRPSSGV DHKEGVEQKS  120
QVKRARVSVR TRCDAPTMYD GCQWRKYGQK ISKGNPCPRA YYRCTVAPDC PVRKQVQRSF  180
EDMSILVTTY EGSHNHPIPV SATTMASTTA AAASMLLSGS STSQPALSTE INGLNFSSSL  240
HDNSRLPSYP TITLDLTGSP SSSSSLNYFN RFPTNCPATP RFPSTNLNFS SPLVSNESFT  300
QENYFYQQSL TDTLTKAITS DPSFRSLISA AISSLVGHSS AKHGDGTDQK GDSFSQNLMQ  360
AAINSQSLND SSLRGSSYFK GFESSSSRIG SSNQPSSLSF SSFNAASTLA FDNKQGKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-19	125	199	1	74	WRKY transcription factor 1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269\|PubMed:24884371}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM438471	0.0	KM438471.1 Gossypium aridum WRKY75 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016672884.1	0.0	PREDICTED: probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	8e-82	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A1U8IAU2	0.0	A0A1U8IAU2_GOSHI; probable WRKY transcription factor 72
STRING	Gorai.006G025700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24889	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	3e-72	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]