PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D09G0113 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 511aa MW: 55877.1 Da PI: 7.0807 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.7 | 3.2e-30 | 228 | 285 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK++kg e+prsYY+Ct+++Cpvkk versa ++ ++ei+Y+++Hnhek Gh_D09G0113 228 EDGYNWRKYGQKQIKGCEYPRSYYKCTHPSCPVKKIVERSA-EGLITEIIYKSTHNHEK 285 7****************************************.***************85 PP | |||||||
2 | WRKY | 107.3 | 7.9e-34 | 396 | 454 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+ Gh_D09G0113 396 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASSDPKAVITTYEGKHNHD 454 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.068 | 222 | 286 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-26 | 223 | 286 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-24 | 225 | 286 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-33 | 227 | 285 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-24 | 228 | 284 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.8E-37 | 382 | 456 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.68E-30 | 388 | 456 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 39.226 | 391 | 456 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.8E-40 | 396 | 455 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-26 | 397 | 454 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MAAEQGKRSK LSAPTYPTIT LPPRPPIDGL FQSGSGLSPG PMTLVSAFFS DPDSTNRSFS 60 QLLASAMASP GAKLPYNPMD DSFMEVGFEN GGEKNSGFKQ NRPLNLGVDN SPWFTVPPGL 120 SPSGLLNSPG LFCLSPQSPF GKSHQQALAQ VTAQAALVQS HVHAQPEYQT LSAATSSEPS 180 IPPSSANPEE TLQRMLSSDP QSSAMEYLEA SQFDKKSQPC VAVDKPTEDG YNWRKYGQKQ 240 IKGCEYPRSY YKCTHPSCPV KKIVERSAEG LITEIIYKST HNHEKPPPNK QPKGGSDGNA 300 NSQGNLELGS LVVAGNSNNL SEGKNHESTQ PVELPGFSDC EEGCDEESRE ERDDDEPNPK 360 RRQVLNHTGE AAVVLSHKTV TDAKIIVQTR SEVDLLDDGY RWRKYGQKVV KGNPHPRSYY 420 KCTSAGCNVR KHVERASSDP KAVITTYEGK HNHDVPAARN GSHNTVNNSL PQPKQQHDAV 480 AEKHSLLQEI DFRKNVQGPA VLRLKEEQIR V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-39 | 228 | 457 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-39 | 228 | 457 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.20300 | 0.0 | boll| embryo| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ966887 | 0.0 | FJ966887.1 Gossypium hirsutum WRKY3 transcription factor (WRKY3) mRNA, complete cds. | |||
GenBank | KF031105 | 0.0 | KF031105.1 Gossypium hirsutum WRKY transcription factor 74 (WRKY74) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012483543.1 | 0.0 | PREDICTED: probable WRKY transcription factor 3 | ||||
Swissprot | Q9XI90 | 1e-138 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | A0A0D2RVP3 | 0.0 | A0A0D2RVP3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G013300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1534 | 27 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-112 | WRKY DNA-binding protein 4 |
Publications ? help Back to Top | |||
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