PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0072
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 308aa    MW: 33955.6 Da    PI: 6.9966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0072genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.73.7e-17133179455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Gh_D09G0072 133 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 179
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-21128195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-18132183No hitNo description
Gene3DG3DSA:4.10.280.103.6E-21133189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-14133179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-18135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDHQHEQQED DKSLKHKNNL MQREVNELSG MAIGSSHCGS NQVRNDGDLS RGSSNGIGTT  60
STGLSVGTSK DDEDDDNGGQ VENEKGTSGG VTSSQKRKNR DGREDYECQC EFAEVKPVRR  120
SGSCRRQSRA AEVHNLSERR RRDRINEKMR ALQELIPHCN KTDKASMLDE AIEYLKSLQL  180
QLQVMWMGNG MAPMMFPGIQ HYMSPMAMGT APPTMPSIQN QRFIQNPTFS EQYARFLGFH  240
HMQTASQPIN MFGYGSQTTP QSPTVLGFSN GSNPLNGGTT ATNNTSLSGK IGGEVQLECK  300
TTANPGFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016727800.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_016727801.10.0PREDICTED: transcription factor PIF4-like
TrEMBLA0A1U8MLU50.0A0A1U8MLU5_GOSHI; transcription factor PIF4-like
STRINGGorai.006G008800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34682561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.23e-43phytochrome interacting factor 4