PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2572
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 217aa    MW: 24056.4 Da    PI: 4.5948
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2572genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-181767155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+ykGVr +k +g+Wv+eIr p++   r r++lg++++ae+Aaka + a  +l+g
  Gh_D08G2572 17 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAAKAFDVALYCLRG 67
                 89*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.39E-271775No hitNo description
PfamPF008475.1E-111767IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-201776IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-281876IPR001471AP2/ERF domain
SMARTSM003802.8E-311881IPR001471AP2/ERF domain
PROSITE profilePS5103221.9971875IPR001471AP2/ERF domain
PRINTSPR003673.1E-91930IPR001471AP2/ERF domain
PRINTSPR003673.1E-94157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MKPTSPVEHV SNSGSSSKYK GVRKRKWGKW VSEIRLPNSR ERIWLGSYDS AEKAAKAFDV  60
ALYCLRGPEA NFNFPKNPPE IVGGRSLTPP EIRAVAARLA NQVDDQDGAD NNNDNNDSSN  120
DNYVRKEQCT SSSSGAGPLQ AEENHEMGWL PFLSMDTDNQ WMSDSRLYSP VSRILSYGGD  180
QLFPPSPPIS PPPIDDNADE YQYCGDGFSP SSSLWDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1517751372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925KGVRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.165969e-31ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098763709e-31
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016720463.11e-160PREDICTED: ethylene-responsive transcription factor ERF017-like
TrEMBLA0A1U8M4A01e-158A0A1U8M4A0_GOSHI; ethylene-responsive transcription factor ERF017-like
STRINGGorai.004G285900.11e-158(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-44ERF family protein