PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D08G2565 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 25729.5 Da PI: 5.1468 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.8e-16 | 47 | 97 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kG r +k +g+Wv+eIr p++ r r++lg+++tae+Aa+a +aa +l+g Gh_D08G2565 47 SRFKGARKRK-WGKWVSEIRLPNS---RERIWLGSYDTAEQAARAFDAALFCLRG 97 6899999998.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.05E-19 | 47 | 106 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.3E-9 | 47 | 97 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.59E-28 | 47 | 107 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-28 | 48 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.799 | 48 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-30 | 48 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-9 | 49 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-9 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MACHVAFPIT ALRLRKSKSY APHLCLTEHS PVKQNTGRKP ESERPDSRFK GARKRKWGKW 60 VSEIRLPNSR ERIWLGSYDT AEQAARAFDA ALFCLRGRSA KFNFPDNPPD IAGGGSLTHA 120 EIQAVAARFA NSAPPRTHAE EQSTSGFQTE SPSPSVSVET VRVDGELPVD DGSFLDDLTM 180 GSGHYDSGYG LFPEFDDFSS DFTGLLSVPN IDCEEDDNLA WNLNSEPFLW NF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 47 | 105 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX582906 | 5e-32 | JX582906.1 Gossypium hirsutum clone NBRI_GE15829 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016720476.1 | 1e-148 | PREDICTED: ethylene-responsive transcription factor ERF017-like, partial | ||||
Swissprot | Q84QC2 | 7e-56 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A0D2S7F5 | 1e-170 | A0A0D2S7F5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G285200.1 | 1e-171 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1614 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-55 | ERF family protein |
Publications ? help Back to Top | |||
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