PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2512
Common NameHSF11
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 327aa    MW: 36647.7 Da    PI: 6.1729
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2512genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35131042102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d+++++li+w +++nsf+v+d+ +f++k+Lp yFkhsnf+SFvRQLn+YgF+kv++++         weF++++F +g+k+ll+++ 
   Gh_D08G2512  13 FVAKTYQMVNDPATDDLITWGKTNNSFIVIDPLDFSHKILPFYFKHSNFTSFVRQLNTYGFRKVDSDK---------WEFANEWFLRGQKHLLKNVV 100
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
   Gh_D08G2512 101 RRKT 104
                   9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-37797IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.7E-539102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.9E-3310102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.1E-181336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.6E-3013102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-185163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEAANCNDVV PPFVAKTYQM VNDPATDDLI TWGKTNNSFI VIDPLDFSHK ILPFYFKHSN  60
FTSFVRQLNT YGFRKVDSDK WEFANEWFLR GQKHLLKNVV RRKTGGNRCV RLKKGEVLDG  120
GSDGDGYDDG EIVMEIARMK EEQKWLEEEL KGMNERLETT ERRPKQMVAF LRQVVEDPGF  180
VLCLVLEKQR SRRIMLEKRR LKVVPPLAVS NNSVKYEGEG WHAELISSSS SPSPSPEDSM  240
VVLERRDIVG QVMNNGCGTI TSQSPVVVPP VNGNSTAVFS SGMSSLLGYG DGNGQLRYLG  300
DMAEVAGGTM EARVSLPYPF SLFGDGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-251010426131Heat shock factor protein 1
5d5v_B3e-251010426131Heat shock factor protein 1
5d5v_D3e-251010426131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486140.0KJ748614.1 Gossypium hirsutum HSF11 (HSF11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314358.10.0heat stress transcription factor C-1-like
SwissprotQ9LV521e-74HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A1U8MN920.0A0A1U8MN92_GOSHI; heat stress transcription factor C-1-like
STRINGGorai.004G280100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2456634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.15e-67heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]