PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G2462

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 351aa MW: 40698.5 Da PI: 4.7525

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G2462	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.5	1.3e-09	282	328	6	52
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++k q+++Le+++++++ p+ +++ + + ++L+ ++V WF +R Gh_D08G2462 282 RLKKVQIDTLEKVYRRSKRPTNTMISSIVQVTNLPRKRVVKWFEDKR 328 57899***************************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.944	274	334	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.76E-9	277	340	IPR009057	Homeodomain-like
CDD	cd00086	3.21E-6	277	328	No hit	No description
SMART	SM00389	7.8E-5	280	338	IPR001356	Homeobox domain
Pfam	PF00046	4.3E-7	282	328	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.3E-8	282	334	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MASALSVNSS ISVRILQSSY RGRVYVAQPR YFNLLPAPQS RRRYTVAYSR RRNNQPASTE 60 KKKRLKKEKK KGLVEKEEED FEGDPFEALF KQLEEDLKND NPDMEDDDDE GDEINEEDID 120 RLANDLAEAF GDFDFEGFSS APNDAEEEVE DDGEEDGNDD EVEERPVKLK NWQLRRLAAA 180 LKVGRRKTSI KTLAAELCLD RAVVLELLRE PPPELLMISA TLPDEPVNKE PEPESEPEPE 240 PMPETKHVET LAFETTMDNV KHEPKVKEPI HVMQQRWSAQ KRLKKVQIDT LEKVYRRSKR 300 PTNTMISSIV QVTNLPRKRV VKWFEDKRNE DGVPEHRQPY RRYGSETVFS D

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MASALSVNSS ISVRILQSSY RGRVYVAQPR YFNLLPAPQS RRRYTVAYSR RRNNQPASTE  60
KKKRLKKEKK KGLVEKEEED FEGDPFEALF KQLEEDLKND NPDMEDDDDE GDEINEEDID  120
RLANDLAEAF GDFDFEGFSS APNDAEEEVE DDGEEDGNDD EVEERPVKLK NWQLRRLAAA  180
LKVGRRKTSI KTLAAELCLD RAVVLELLRE PPPELLMISA TLPDEPVNKE PEPESEPEPE  240
PMPETKHVET LAFETTMDNV KHEPKVKEPI HVMQQRWSAQ KRLKKVQIDT LEKVYRRSKR  300
PTNTMISSIV QVTNLPRKRV VKWFEDKRNE DGVPEHRQPY RRYGSETVFS D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	65	RRRYTVAYSRRRNNQPASTEKKKRLK
2	49	63	RRRNNQPASTEKKKR
3	60	70	KKKRLKKEKKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2600	0.0	embryo\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250\|UniProtKB:Q70Z19, ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769, ECO:0000269\|PubMed:20836879, ECO:0000269\|PubMed:21564353}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX587556	1e-112	JX587556.1 Gossypium hirsutum clone NBRI_GE21695 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016731628.1	0.0	PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like
Swissprot	Q8H0V5	1e-78	OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBL	A0A1U8N1G0	0.0	A0A1U8N1G0_GOSHI; protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like
STRING	Gorai.004G274200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12077	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	1e-61	overexpressor of cationic peroxidase 3

Publications ? help Back to Top
García-Andrade J,Ramírez V,López A,Vera P Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gamir J,Pastor V,Kaever A,Cerezo M,Flors V Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]