PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D08G2421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Whirly | ||||||||
Protein Properties | Length: 229aa MW: 25221.8 Da PI: 9.9264 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 174.7 | 2e-54 | 51 | 190 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealds..gnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkve 97 +yk+ka++++ +v+ptf+++ds g lk++r+G+++l++ +a++erkydWe++q+fals+tev++l+++++++++ef+hdp++++sn+G+v k l ++ Gh_D08G2421 51 IYKGKASVSISPVLPTFVKMDSdiGGLKVNRRGSMMLTFCPAIGERKYDWEQRQKFALSPTEVGSLISMGAHDASEFYHDPSMQSSNAGQVSKKLCIK 148 9******************99944679*********************************************************************** PP Whirly 98 PlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 + G G++++l+vtn+++k+ne+f vPv+ aefavl+++++ Gh_D08G2421 149 AFDGGNGYMISLTVTNNVLKSNENFNVPVTTAEFAVLKTAFS 190 **9999*********************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 5.2E-67 | 38 | 206 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 5.89E-61 | 42 | 229 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.3E-52 | 51 | 187 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MLKQCRSLLS RSLKSAKWGD GFESRAAFST SLQDFAATGN ANGRVFAPYT IYKGKASVSI 60 SPVLPTFVKM DSDIGGLKVN RRGSMMLTFC PAIGERKYDW EQRQKFALSP TEVGSLISMG 120 AHDASEFYHD PSMQSSNAGQ VSKKLCIKAF DGGNGYMISL TVTNNVLKSN ENFNVPVTTA 180 EFAVLKTAFS FALPHIMGWD WLTNQSPKGI KGSPSKVNPK QHFDLEWDR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 3e-82 | 42 | 205 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 3e-82 | 42 | 205 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 3e-82 | 42 | 205 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 3e-82 | 42 | 205 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.4612 | 0.0 | boll| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016692051.1 | 1e-172 | PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial-like | ||||
Swissprot | D9J034 | 3e-90 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A1U8JP46 | 1e-171 | A0A1U8JP46_GOSHI; single-stranded DNA-bindig protein WHY2, mitochondrial-like | ||||
STRING | Gorai.004G266000.1 | 1e-164 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12358 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 4e-85 | WHIRLY 2 |