PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2402
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 1112aa    MW: 122985 Da    PI: 6.3573
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2402genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.45.7e-11702758155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Gh_D08G2402 702 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 758
                  57*******************5444.2455536655.779999**************98 PP
2AP245.12.5e-14803852355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Gh_D08G2402 803 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 852
                  9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF534741.64E-262036IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18202.8E-232334IPR029058Alpha/Beta hydrolase fold
PfamPF024501.2E-2068254IPR003386Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase
Gene3DG3DSA:3.40.50.18202.8E-23115215IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534741.64E-26117416IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18202.8E-23330345IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18202.8E-23380423IPR029058Alpha/Beta hydrolase fold
PfamPF008472.2E-8702758IPR001471AP2/ERF domain
CDDcd000182.91E-19702768No hitNo description
SuperFamilySSF541711.63E-14702768IPR016177DNA-binding domain
PROSITE profilePS5103217.411703766IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-11703767IPR001471AP2/ERF domain
SMARTSM003807.1E-23703772IPR001471AP2/ERF domain
PRINTSPR003678.8E-6704715IPR001471AP2/ERF domain
CDDcd000186.48E-24801862No hitNo description
SuperFamilySSF541712.29E-17801862IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.9E-18802861IPR001471AP2/ERF domain
SMARTSM003807.1E-33802866IPR001471AP2/ERF domain
PROSITE profilePS5103219.203802860IPR001471AP2/ERF domain
PfamPF008473.5E-9803852IPR001471AP2/ERF domain
PRINTSPR003678.8E-6842862IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006629Biological Processlipid metabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008374Molecular FunctionO-acyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1112 aa     Download sequence    Send to blast
MLRDRFCPCF GSQSSGDTGP DLDPVLLVSG IGGSILHSKK KLFGIEFETR VWVRILFSDM  60
EFKKKLWSLY NPKTGYTESL DEDVEILVPD DDYGLYAIDV LDPSLVIKLL HFSEVYHFHD  120
MIDMLVGCGY KKGTSLFYDF RQSNRIDKLM DGLKVKLETA YKASGGRKVT IISHSMGGLL  180
VMCFMSLHNE VFSKYVNKWV TIACPFQGAP GCINDALLTG LQFIEGFEAY FFVSRWTMHQ  240
LLVECPSVYE MLPNPYFSWK MQPQINVWRG HTEDGETSVK LESYSPIESI SLFKEALRHN  300
ELDYGGNTIA LPFNFSILNW AAGTRKLIDN AKLPSGVRFY NIYGTSFDTP FDVCYGTETS  360
PIADLSEICH TMPQYTYVDG DGTVPAESAM ADGFEAVEKV GVAATHRGLL CDQTVFKLIQ  420
KWLGIEQKIK KQLKTSKVVQ EVLFFLSKMK TLDGWECNKI KIAEKEKEVS RLGFNSDGIS  480
GTDVSGECFD LAGDSSVPSL NLPPPFGILE AFHRNSNQPQ DWNMKGSELS MVMGGSSCNT  540
QEPKLENFLG NHGCHTMYDT TTGQYSLYTT TTARTTNGGG DEDNSTNNNT NLTHGASNSN  600
TNSGNSIGLS MIKTWLRNQP APPQVETKNN GGGGSGGGGA SQSLSLSMST GGGGGGSGGE  660
SSSSDNKKTP PQPPSTGVEI TQTGTNEAVA RKSIDTFGQR TSIYRGVTRH RWTGRYEAHL  720
WDNSCRREGQ SRKGRQGGYD KEEKAARAYD LAALKYWGTT TTTNFPISNY EKELEEMKHM  780
TRQEYVASLR RKSSGFSRGA SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA  840
EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL ESSQLPIGGT AKRLKDVEQA EMAMDMVHRS  900
DGDNINTHLP GGINTYGTSG WPTIAYQQAQ PFSMHYPYGQ RIWCKQEQDS DPDHAFHDLH  960
QLQLGSTHNF FQPSVLHNLM AMESSSMEHS SGSNTNSVIY NNTVSDGAGY GGYAIPLGTV  1020
IPTDTNQNQS NDFGDNSNNE VKALGYENVY TSSTDPYHSR NMYYLSQQSS SSTSQASPCN  1080
NWVPTAVPTI AQRSSNMAVC HGAPTFTVWN DT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.35580.0boll| ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738615800.0
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476927.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A0D2S6H30.0A0A0D2S6H3_GOSRA; Uncharacterized protein
STRINGGorai.004G263900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-132AP2 family protein