PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2369
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 511aa    MW: 58695.8 Da    PI: 10.289
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2369genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444e-14231031499
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  + l +pk+f++ +g +   s t++++ ++g +W+v+l   k++g+++l++GWk+F++   Lk g  ++F+++g+s+f +v+++f++
  Gh_D08G2369  23 QKLPMPKRFVSLYGDD--LSNTVIVKAPTGPEWKVEL--MKCDGEIWLANGWKDFADYFSLKYGNLLIFRYEGHSRF-YVFMIFDQ 103
                  56889*****999988..889****************..*********************************99999.99999986 PP
2B350.63.5e-16211307199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ff v +++++ +     +p +fa+++     ++ +++l+d++gr+W + l++ +k   + +++GWk F+ +n+L++gD++ F+  +  e +++v++fr
  Gh_D08G2369 211 FFVVNIQPSYITAFHANVPFTFARTYFTW--KEADVILKDRDGRTWPIHLKVYNKYHCTSFGRGWKAFAIDNDLRVGDSCAFEQLEGPEISFRVTIFR 306
                  677788888888888999********744..4558***************87555556789**********************555577778999998 PP

                  S CS
           B3  99 k 99 
                  +
  Gh_D08G2369 307 N 307
                  6 PP
3B358.31.4e-18413505298
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  fkv ++ + l++g  ++p +f++eh+++   + ++tl+  + +sW+v++i++  +    ++ GW+ Fv+ n+Lk+gD++vFk++++++  + v++fr
  Gh_D08G2369 413 FKVIITTNFLQRGFPSIPERFCDEHMEQ--IPADVTLKY-KHKSWRVRMIICSDRA-SRFSVGWRAFVQGNKLKVGDVCVFKMIKKTNIVFEVSIFR 505
                  799999999****99**********866..677899877.779******7644433.46899********************998877777888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-17899IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-18999IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.95710103IPR003340B3 DNA binding domain
CDDcd100171.12E-1213102No hitNo description
SMARTSM010198.5E-1014104IPR003340B3 DNA binding domain
PfamPF023622.6E-1121103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-22205306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-22205307IPR015300DNA-binding pseudobarrel domain
CDDcd100173.59E-19210306No hitNo description
PROSITE profilePS5086313.592211308IPR003340B3 DNA binding domain
PfamPF023627.8E-14211307IPR003340B3 DNA binding domain
SMARTSM010191.4E-14211308IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-22405505IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-19408505IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.902412507IPR003340B3 DNA binding domain
CDDcd100171.07E-18412505No hitNo description
SMARTSM010199.7E-17412507IPR003340B3 DNA binding domain
PfamPF023621.4E-15413505IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MFTSSMNHPK TLHFFRIILS QTQKLPMPKR FVSLYGDDLS NTVIVKAPTG PEWKVELMKC  60
DGEIWLANGW KDFADYFSLK YGNLLIFRYE GHSRFYVFMI FDQTTFEIEY PNGIDNPDVE  120
LQIPDVEEVG SEDVVEIVNN VSPSRKTTEK TRSSPRRRTR MQGATNAKKS EFRMSSRDGS  180
KIGPEQAGGG TSAAQRSSAS SANHFGSEKP FFVVNIQPSY ITAFHANVPF TFARTYFTWK  240
EADVILKDRD GRTWPIHLKV YNKYHCTSFG RGWKAFAIDN DLRVGDSCAF EQLEGPEISF  300
RVTIFRNPED SNDRHTSTRG SKIGHGRHKR ELNARSQIEY DHSSEDEMIR YSKRNKGSQV  360
PRRKIKTRDG KFDEAMQNKT SARRAIQRLP SKGTAIARAL ERVSKLRSAH PLFKVIITTN  420
FLQRGFPSIP ERFCDEHMEQ IPADVTLKYK HKSWRVRMII CSDRASRFSV GWRAFVQGNK  480
LKVGDVCVFK MIKKTNIVFE VSIFRDGLTL G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016691939.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1U8JUJ20.0A0A1U8JUJ2_GOSHI; B3 domain-containing transcription factor VRN1-like
STRINGGorai.004G260200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2438934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-20B3 family protein