PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2242
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 331aa    MW: 37416 Da    PI: 8.3272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2242genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.82e-13122173155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Gh_D08G2242 122 QRMTHIAVERNRRKQMNDYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 173
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.84E-13120177No hitNo description
PROSITE profilePS5088815.364121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-16121189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-14122185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MALEAVIFQQ DLLGYNSNWS HDFGLGKPES KDSFGCFPDN QTPEINHFVH GDYWVSTTPT  60
SSMAAPVPYH HQLQHHCPNS SSDAANVNGL SSSGDPFYAS TTPRPKRRRF KARKNKQEIE  120
NQRMTHIAVE RNRRKQMNDY LSVLRSLMPE SYVQRGDQAS IIGGAINFVK ELEHRLQRLS  180
TEKEVKERSS LTNGGRRSCS SVFDEFFTFP QYSTSSKQGD RKDSISMNDQ STVETQSAIA  240
DIEVTMVERH VNLRIRSKKR PAQLLKVVSG LNYMRLSILH LNVTTLDQTV LYSLSVKVEE  300
DCKLTSVDDI ATAVNQLLGS IEDALLTRNF P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122133RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016680233.10.0PREDICTED: transcription factor bHLH94-like isoform X1
SwissprotQ9C7T44e-74BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1U8IUZ30.0A0A1U8IUZ3_GOSHI; transcription factor bHLH94-like isoform X1
STRINGGorai.004G243100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]