PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2181
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 290aa    MW: 33175.2 Da    PI: 5.9292
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2181genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.3e-082342662355
                  SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Gh_D08G2181 234 PYPTEEEKLKLSEITGLDQKQINNWFINQRKRH 266
                  8*****************************885 PP
2ELK35.81.7e-12186207122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ++K +L+rKYsgyL++L++EF+
  Gh_D08G2181 186 DIKGMLMRKYSGYLCNLRKEFL 207
                  58*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.6E-1755100IPR005540KNOX1
PfamPF037901.4E-165799IPR005540KNOX1
SMARTSM012563.7E-26104155IPR005541KNOX2
PfamPF037912.4E-25107154IPR005541KNOX2
PfamPF037894.8E-8186207IPR005539ELK domain
PROSITE profilePS5121310.057186206IPR005539ELK domain
SMARTSM011882.9E-5186207IPR005539ELK domain
PROSITE profilePS5007112.325206269IPR001356Homeobox domain
SMARTSM003893.9E-13208273IPR001356Homeobox domain
SuperFamilySSF466892.48E-19208278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-27211271IPR009057Homeodomain-like
CDDcd000866.49E-13218270No hitNo description
PfamPF059201.1E-16226265IPR008422Homeobox KN domain
PROSITE patternPS000270244267IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEDLYRLDDR TVSSSNDSAR VNNNLAAAVT TTGFHSPVHH LLQFDHQAAD TDMYDVIKTQ  60
IANHPRYPDL VSAHIECRKV VGAPPQLGSL LEEIGRENHH PTSGCSEIGA DPELDDFMES  120
YCEVLHKYKE ELSKPFDEAT TFLSNIESQL SNLCKGALTK TLDYGSDEAC ESSGWEAEAY  180
ESGQEDIKGM LMRKYSGYLC NLRKEFLKKR KKGKLPKDAR MVLLHWWNNH YRWPYPTEEE  240
KLKLSEITGL DQKQINNWFI NQRKRHWKPS EDMKFSLMEG FAGNINGGPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201210LRKEFLKKRK
2207211KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.250040.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5831686e-72JX583168.1 Gossypium hirsutum clone NBRI_GE16149 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016721537.10.0PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP291e-89KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A2P5QB660.0A0A2P5QB66_GOSBA; Uncharacterized protein
STRINGGorai.004G236400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-73KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]