PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G2032

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 320aa MW: 35882.8 Da PI: 10.5257

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G2032	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.5	2.1e-31	254	311	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+ Gh_D08G2032 254 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 311 99*********************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	4.3E-18	205	250	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.6E-33	240	312	IPR003657	WRKY domain
PROSITE profile	PS50811	29.953	247	313	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-27	250	312	IPR003657	WRKY domain
SMART	SM00774	2.0E-38	252	312	IPR003657	WRKY domain
Pfam	PF03106	2.5E-27	254	311	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MEEVEEANKA AVESCHRVLS ILSQPKDQIQ YRNLMAETGE AVFRFKRVVS LLNTSLGHAR 60 VRKMRKLQTP FPQSILLDNP HRKATTDNPS KNLQLGPLYL GNNHQTAQPA SSGPYHMLQQ 120 QQQFRQRLQL HQQQMKHQAE MMFRKSNSGI SLNFENSSCT PTMSSTRSFI SSLSIDGSVA 180 KLDGGGGSFH FTGGSRSLDQ GPRHKKKCSG RGEDGSVKCG SSGKCHCSKK RKHRVKRSIK 240 VPAISNKLAD IPPDDYSWRK YGQKPIKGSP HPRGYYKCSS MRGCPARKHV ERCLEEPSML 300 IVTYEGEHNH PRLPSQSTTT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-20	245	314	7	75	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.19148	0.0	boll

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF220642	0.0	KF220642.1 Gossypium hirsutum WRKY39-1 (WRKY39-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012476258.1	0.0	PREDICTED: probable WRKY transcription factor 21
Swissprot	Q9SR07	1e-101	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	A0A0D2R8S1	0.0	A0A0D2R8S1_GOSRA; Uncharacterized protein
STRING	Gorai.004G219300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3567	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	8e-85	WRKY DNA-binding protein 21

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]