PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1998
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 680aa    MW: 76178 Da    PI: 4.8058
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1998genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444.1e-14481527455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Gh_D08G1998 481 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 527
                  7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-529186IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.88E-19477545IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.625477526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.31E-15481531No hitNo description
PfamPF000101.1E-11481526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-19481543IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17483532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MAAPPSSRLQ KMLQAAVQSV QWTYSLFWQI CPQQGILIWS DGYYNGAIKT RKTVQPMEVS  60
TEEASLQRSQ QLRELYDSLS SGDTNQPARR PSAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKTVLCIPIL DGVLELGYTE KVQEDLGLVQ  180
HVKTFFNDGK APNPPPPKPA LSEHSTSNPA ASSDYTRFHS PSVPLVYAAA DPPVNADQGE  240
YNNVDEEEEE EEEDDDDEEG DEEPESYSAE TGRTTQQVPT ENTLAVVAAE EPSELMQLDM  300
SEDIKLGSPD DASNNLDSDF NMLAVSQSGN PTDNQRRAEL FRDESNRRWQ MLQEPSCGSL  360
QPLSTGPQPV DEMSQEDTHY SQTVSTILQA QLVRWTESSS TVNAATYSTQ SAFAKWTTHS  420
DHHLHSAVVE GTSQWLLKYI LFTVPFLHNK YHDENSPKLR DAAVAAARFR KGTPNEDLSA  480
NHVLAERRRR EKLNERFIIL RSLVPFVTKM DKASILGDTI EYVKQLRKKI QDLETRNKQM  540
EADNDRPRSA DSMQRNSSSK DQRSGLTTRS SGPDKKKMRI AEATKQKTVE PPPQTAETSV  600
EVSIIESDAL LELQCGYREG LLLDIMQMLR EKLRIEITAV QSSLNNGLFT AELRAKVKDN  660
MNGKKVSIME VKRAINQIIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-2191879193Transcription factor MYC3
4rqw_B4e-2191879193Transcription factor MYC3
4rs9_A4e-2191879193Transcription factor MYC3
4yz6_A4e-2191879193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1485490ERRRRE
2486491RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.142970.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6988620.0KP698862.1 Gossypium hirsutum basic helix-loop-helix protein 064D (bHLH064D) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476198.10.0PREDICTED: basic helix-loop-helix protein A-like isoform X2
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0D2R8K80.0A0A0D2R8K8_GOSRA; Uncharacterized protein
STRINGGorai.004G215900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94222836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-90bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]