PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1942
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YC
Protein Properties Length: 121aa    MW: 13108.2 Da    PI: 9.2066
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1942genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC107.77.2e-34221021998
        NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                  h lPlarikki+k + edvkmis e+P+++skacelfi elt rsw+ + + krrtl+k d+a+av  td fdflv+ v +
  Gh_D08G1942  22 HLLPLARIKKIMKkSGEDVKMISGESPIVFSKACELFIKELTQRSWMVTMQGKRRTLNKEDVASAVMATDLFDFLVNLVSE 102
                  78**********73579***********************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.15E-261696IPR009072Histone-fold
PfamPF008089.0E-212487IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.3E-3024101IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MRQAGTYSGI LSGGISGKTG PHLLPLARIK KIMKKSGEDV KMISGESPIV FSKACELFIK  60
ELTQRSWMVT MQGKRRTLNK EDVASAVMAT DLFDFLVNLV SESGNSGEAP PPLELDTFTS  120
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-32221001693NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477989.11e-84PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_016717067.11e-84PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ655V52e-31NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0D2S3E13e-83A0A0D2S3E1_GOSRA; Uncharacterized protein
TrEMBLA0A1U8LR623e-83A0A1U8LR62_GOSHI; nuclear transcription factor Y subunit C-2-like
STRINGGorai.004G209900.14e-84(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17140911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.33e-33nuclear factor Y, subunit C3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]