PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D08G1922 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 24809.9 Da PI: 6.2424 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3e-17 | 70 | 118 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r++ +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+g Gh_D08G1922 70 LYRGIRRR--SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 118 69***854..6*********843...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.1E-11 | 69 | 118 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.19E-17 | 69 | 128 | No hit | No description |
PROSITE profile | PS51032 | 20.455 | 70 | 126 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-18 | 70 | 128 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.5E-28 | 70 | 132 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-27 | 70 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MADPNNPTNV PQLNQSSQRP VLLSLDQHSL ITTNSHTCQN PSPACHGLPP PTPRKANMAS 60 ASSPSGKHPL YRGIRRRSGK WVSEIREPRK TTRIWLGTYP TPEMAAAAYD VAALALKGAE 120 AFVNFPASVA SYPLPASISS ADIRKAAAAA ALLKKAESNG IEIDLGSGHP HPAKKEEMTS 180 TEEYMDEDVF LNLPNLLVDM AEGLLVSPPR LSSTPSDDSP ENSDGESLWS Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-13 | 66 | 131 | 3 | 68 | ATERF1 |
3gcc_A | 1e-13 | 66 | 131 | 3 | 68 | ATERF1 |
5wx9_A | 1e-13 | 67 | 126 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012477988.1 | 1e-168 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
Refseq | XP_016717049.1 | 1e-168 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9FJ90 | 1e-54 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A0D2N1E8 | 1e-167 | A0A0D2N1E8_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8LUZ1 | 1e-167 | A0A1U8LUZ1_GOSHI; ethylene-responsive transcription factor ERF027-like | ||||
STRING | Gorai.004G208000.1 | 1e-168 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1957 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 6e-49 | ERF family protein |
Publications ? help Back to Top | |||
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