PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1910
Common NameKNL1
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 300aa    MW: 33779.1 Da    PI: 6.7069
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1910genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.8e-082492822154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp+++++++L +++gL+ +q+ +WF N+R +
  Gh_D08G1910 249 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 282
                  469*****************************87 PP
2ELK25.53.1e-09203224122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK +L++++++++ ++++E++
  Gh_D08G1910 203 ELKIELKQGFKSRIEDVREEIL 224
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.2E-193478IPR005540KNOX1
PfamPF037905.3E-173677IPR005540KNOX1
SMARTSM012567.8E-2492147IPR005541KNOX2
PfamPF037911.6E-1795146IPR005541KNOX2
PROSITE profilePS512139.132203223IPR005539ELK domain
PROSITE profilePS5007111.677223286IPR001356Homeobox domain
SuperFamilySSF466894.02E-16225290IPR009057Homeodomain-like
SMARTSM003891.4E-10225290IPR001356Homeobox domain
CDDcd000865.54E-11226287No hitNo description
Gene3DG3DSA:1.10.10.607.0E-25230288IPR009057Homeodomain-like
PfamPF059201.0E-17243282IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MQEPGLGMMS SGGGSGGIGG LSSGEVSVSG EQNRQLKAEI AVHPLYEQLL AAHVSCLRVA  60
TPIDQLPLID AQLAQSHNLL RSYASQHHQH GHSLSPHERQ ELDNFLAQYL IVLCTFKEQL  120
QQHVRVHAIE AVMACREIEN NLQALTGVTL GEGTGATMSD DEDDMQMDFS LDQSGTDGHD  180
LMGFGPLIPT ESERSLMERV RQELKIELKQ GFKSRIEDVR EEILRKRRAG KLPGDTTTVL  240
KNWWQQHSKW PYPTEDDKAK LVEETGLQLK QINNWFINQR KRNWHSNSQS VTSLKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12226282864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279299RKRNWHSNSQSVTSLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.59940.0boll
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2002500.0KC200250.1 Gossypium hirsutum KNOX protein (KNL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314239.10.0homeobox protein HD1-like
SwissprotQ9FPQ81e-174KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A2P5RVM60.0A0A2P5RVM6_GOSBA; Uncharacterized protein
TrEMBLV9P8200.0V9P820_GOSHI; KNOX protein
STRINGGorai.004G206600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-170KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Gong SY, et al.
    Cotton KNL1, encoding a class II KNOX transcription factor, is involved in regulation of fibre development.
    J. Exp. Bot., 2014. 65(15): p. 4133-47
    [PMID:24831118]
  5. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]