PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1841
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 292aa    MW: 32811.9 Da    PI: 10.1055
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1841genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.5e-31223279358
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                  D ++WrKYGqK++kgs++prsYY+C+s+ gCp++k+ver+ edp+++++tYeg+H+h
  Gh_D08G1841 223 DDHSWRKYGQKPIKGSPYPRSYYKCSSTrGCPARKHVERCLEDPSMLVVTYEGDHKH 279
                  99************************999***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-16180219IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.8E-32209280IPR003657WRKY domain
PROSITE profilePS5081128.943216279IPR003657WRKY domain
SuperFamilySSF1182903.79E-26218279IPR003657WRKY domain
SMARTSM007743.1E-36221281IPR003657WRKY domain
PfamPF031061.8E-26223279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MNPRWDLKVH EVAESSFRRA NHLFSCICDG SQKRSNQEIS LMAQDTVNGF RKLLSLLDGS  60
MQSECKRIRK GPLPKSHNVN PAELMDSPSF ASQSSICKPS QPHILGQLVS PQFNQSNTRL  120
IPRNVVVLPN LIMGLHHSST LPTMMPIFDK KLIPWSSSEI VVPQDESCML LSKRKIGVES  180
EEASTKCAAS TGGCHCSKRR KLRIRKTIRV PAISNKPSDI PPDDHSWRKY GQKPIKGSPY  240
PRSYYKCSST RGCPARKHVE RCLEDPSMLV VTYEGDHKHL RITFQAPSNV IV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-202192791271WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697960.0KF669796.1 Gossypium hirsutum WRKY transcription factor 28 (WRKY28) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716297.10.0PREDICTED: probable WRKY transcription factor 15 isoform X1
RefseqXP_016716298.10.0PREDICTED: probable WRKY transcription factor 15 isoform X1
TrEMBLA0A1U8LSA50.0A0A1U8LSA5_GOSHI; probable WRKY transcription factor 15 isoform X1
TrEMBLA0A2P5SMC50.0A0A2P5SMC5_GOSBA; Uncharacterized protein
STRINGGorai.004G199500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2013656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-46WRKY DNA-binding protein 21