PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1828
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 349aa    MW: 39629.6 Da    PI: 6.0064
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1828genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK77.71.3e-24253302251
       RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                  + +++l+++++yF+lpi++AAk+++ ++Tv+K+iCR+yG++RWPhRki+s
  Gh_D08G1828 253 TRNLTLKEIENYFHLPIEKAAKKMEFSATVVKKICRKYGLSRWPHRKIQS 302
                  689*********************************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.461243323IPR003035RWP-RK domain
PfamPF020424.4E-22255302IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MADPSSNAPY DPHCMDDVLK FLEIENPTLD DFTNPEKPFL HPSSPMPHCT TDQIDGNTID  60
PLEDPFIRDF YNNDPHNSQL AYGNQSETVC GNDVNNSRPL SLWPTDPIPY HCSCCQSLRE  120
ILHTNGFDVT KLEIHGRLGM ICHAVLTVEP GSNTPGPQYQ MFDFCKKSIE DVKQFLTQYC  180
IDRSQAGFTM IKDPLSVFYQ TLCVGFPRDE NLYNVQPSSI SGMCGNQMDQ AGNSNNNQEK  240
PAKPSLAVQR ERTRNLTLKE IENYFHLPIE KAAKKMEFSA TVVKKICRKY GLSRWPHRKI  300
QSMEKKISNW VESLSSNDPK ERARAKKEIE NLQREIAKFG EGSSKLGDD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5905895e-79JX590589.1 Gossypium hirsutum clone NBRI_GE25529 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475904.10.0PREDICTED: uncharacterized protein LOC105792067
TrEMBLA0A0D2R7U70.0A0A0D2R7U7_GOSRA; Uncharacterized protein
STRINGGorai.004G198100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40762342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.12e-13RWP-RK domain-containing protein