PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D08G1828 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Nin-like | ||||||||
Protein Properties | Length: 349aa MW: 39629.6 Da PI: 6.0064 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 77.7 | 1.3e-24 | 253 | 302 | 2 | 51 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 + +++l+++++yF+lpi++AAk+++ ++Tv+K+iCR+yG++RWPhRki+s Gh_D08G1828 253 TRNLTLKEIENYFHLPIEKAAKKMEFSATVVKKICRKYGLSRWPHRKIQS 302 689*********************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.461 | 243 | 323 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.4E-22 | 255 | 302 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MADPSSNAPY DPHCMDDVLK FLEIENPTLD DFTNPEKPFL HPSSPMPHCT TDQIDGNTID 60 PLEDPFIRDF YNNDPHNSQL AYGNQSETVC GNDVNNSRPL SLWPTDPIPY HCSCCQSLRE 120 ILHTNGFDVT KLEIHGRLGM ICHAVLTVEP GSNTPGPQYQ MFDFCKKSIE DVKQFLTQYC 180 IDRSQAGFTM IKDPLSVFYQ TLCVGFPRDE NLYNVQPSSI SGMCGNQMDQ AGNSNNNQEK 240 PAKPSLAVQR ERTRNLTLKE IENYFHLPIE KAAKKMEFSA TVVKKICRKY GLSRWPHRKI 300 QSMEKKISNW VESLSSNDPK ERARAKKEIE NLQREIAKFG EGSSKLGDD |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX590589 | 5e-79 | JX590589.1 Gossypium hirsutum clone NBRI_GE25529 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012475904.1 | 0.0 | PREDICTED: uncharacterized protein LOC105792067 | ||||
TrEMBL | A0A0D2R7U7 | 0.0 | A0A0D2R7U7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G198100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4076 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 2e-13 | RWP-RK domain-containing protein |