PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1801
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 325aa    MW: 36554.8 Da    PI: 7.569
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1801genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-20182232255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAaka+++a+ kl+g
  Gh_D08G1801 182 HYRGVRQRP-WGKFAAEIRDPTRRG--SRIWLGTFDTAIEAAKAYDRAAFKLRG 232
                  7********.**********97665..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-32181241IPR001471AP2/ERF domain
SMARTSM003803.5E-37182246IPR001471AP2/ERF domain
PfamPF008477.1E-14182232IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23182241IPR016177DNA-binding domain
CDDcd000182.29E-31182240No hitNo description
PROSITE profilePS5103224.171182240IPR001471AP2/ERF domain
PRINTSPR003671.4E-13183194IPR001471AP2/ERF domain
PRINTSPR003671.4E-13222242IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
METSSEISTA LQYIQHYLLD ELSPVGLGNF SNENRWINEV KAEVSTSQPE SLYSQTSSSG  60
SSLTEANFNC LENDDLFKFS PNFRGFQPNG SDVFEYESKP QIIDLITPKS FPSNASSLEF  120
ETKPKITELS TAKPQVSSGC NSKIRKPSLK ISLPHKVEWI QFDKPDLTRP KPNKSNSEDN  180
RHYRGVRQRP WGKFAAEIRD PTRRGSRIWL GTFDTAIEAA KAYDRAAFKL RGSKAILNFP  240
LEAGKLESGA SDGERKRSRD NSEGEEKRAK VVKRESENVT KARDNGDAPL TPSNWTAFWD  300
LDNEIKEIFN VPLLSPLGFS HVMVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-29181241161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.98809e-69boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4108656e-66KC410865.1 Gossypium hirsutum ethylene-responsive transcription factor (ERF9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716264.10.0PREDICTED: ethylene-responsive transcription factor 5-like
TrEMBLA0A1U8LSS40.0A0A1U8LSS4_GOSHI; ethylene-responsive transcription factor 5-like
STRINGGorai.004G195300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.15e-67ethylene responsive element binding factor 5