PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G1470

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 344aa MW: 37885.6 Da PI: 9.4423

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G1470	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44	5e-14	73	117	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E+e++++a +++ + Wk+I + +g +t q++s+ qky Gh_D08G1470 73 RESWTEQEHEKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 117 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.72E-17	67	123	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.88	68	122	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.6E-18	71	120	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	7.0E-7	71	123	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-11	72	120	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-11	73	117	IPR001005	SANT/Myb domain
CDD	cd00167	8.15E-9	75	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MVSVNPNPAQ GFYFFDPMNM GLPGVNSAPP ANTVAPPLQV PPTPATSGAG NTTVYPEDPS 60 KKIRKPYTIT KSRESWTEQE HEKFLEALQL FDRDWKKIEA FVGSKTVIQI RSHAQKYFLK 120 VQKNGTSEHV PPPRPKRKAA HPYPQKAPKT ASVVPQVAGP YQSSSTLHEP GYTYRRDSSS 180 MPGNPIATAS LSSWSYNSVP PVTVSQVTKD DAVLAGPTIV HNSCYSSSSE STPRTWSFGE 240 TIDRGDHWKQ SRVLPDFAEV YSFIGSVFDP GTSGHLQKLK QMDPINLETV LLLMRNLSIN 300 LMSPDFEDHR RLLSTYDAGS EGIKLGSPYN DIHTRKSASA VPTA

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MVSVNPNPAQ GFYFFDPMNM GLPGVNSAPP ANTVAPPLQV PPTPATSGAG NTTVYPEDPS  60
KKIRKPYTIT KSRESWTEQE HEKFLEALQL FDRDWKKIEA FVGSKTVIQI RSHAQKYFLK  120
VQKNGTSEHV PPPRPKRKAA HPYPQKAPKT ASVVPQVAGP YQSSSTLHEP GYTYRRDSSS  180
MPGNPIATAS LSSWSYNSVP PVTVSQVTKD DAVLAGPTIV HNSCYSSSSE STPRTWSFGE  240
TIDRGDHWKQ SRVLPDFAEV YSFIGSVFDP GTSGHLQKLK QMDPINLETV LLLMRNLSIN  300
LMSPDFEDHR RLLSTYDAGS EGIKLGSPYN DIHTRKSASA VPTA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.14519	0.0	stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016682107.1	0.0	PREDICTED: protein REVEILLE 5-like isoform X1
Refseq	XP_016682108.1	0.0	PREDICTED: protein REVEILLE 5-like isoform X1
Swissprot	C0SVG5	1e-110	RVE5_ARATH; Protein REVEILLE 5
TrEMBL	A0A1U8J0J1	0.0	A0A1U8J0J1_GOSHI; protein REVEILLE 5-like isoform X1
STRING	Gorai.004G159700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1290	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01280.2	3e-95	MYB_related family protein

Publications ? help Back to Top
Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]