PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1424
Common NameWRKY66
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 198aa    MW: 22345.4 Da    PI: 9.3828
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1424genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.3e-32119177159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r ++d ++v++tYeg Hnh+
  Gh_D08G1424 119 LDDGYRWRKYGQKAVKNSNYPRSYYRCTHHTCNVKKQVQRLSKDSSIVVTTYEGVHNHP 177
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-33105177IPR003657WRKY domain
SuperFamilySSF1182901.09E-28112178IPR003657WRKY domain
PROSITE profilePS5081129.034114179IPR003657WRKY domain
SMARTSM007742.0E-38119178IPR003657WRKY domain
PfamPF031062.8E-26120177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDGQELISTP PPAAPPPLTA PFFFAPSTTP SSSLHPLPPL ESQIIPDIDW VSLLYGQALL  60
LQGHGESKPV TETASSLMAE NGGCHQIENG NQDKRKGNRF KKTTRPRFAF QTRSADDILD  120
DGYRWRKYGQ KAVKNSNYPR SYYRCTHHTC NVKKQVQRLS KDSSIVVTTY EGVHNHPCEK  180
LMETLTPLLK QMQFLSRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24109176774Probable WRKY transcription factor 4
2lex_A2e-24109176774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00317DAPTransfer from AT2G46130Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0311030.0KF031103.1 Gossypium hirsutum WRKY transcription factor 66 (WRKY66) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016681426.11e-149PREDICTED: probable WRKY transcription factor 43
SwissprotQ8GY111e-54WRK43_ARATH; Probable WRKY transcription factor 43
SwissprotQ8VWQ41e-53WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A059Q8L71e-147A0A059Q8L7_GOSHI; WRKY transcription factor 66
STRINGGorai.004G155100.11e-147(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.16e-57WRKY DNA-binding protein 43
Publications ? help Back to Top
  1. Geilen K,Heilmann M,Hillmer S,Böhmer M
    WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions.
    Sci Rep, 2017. 7(1): p. 14235
    [PMID:29079824]