PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1370
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 489aa    MW: 56109.1 Da    PI: 6.2071
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1370genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.81.8e-35111323128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  +G+rFhPtd+elv++yL +k+ +++  + ++ikev  +++ +Pw+Lp  +++++ ++ wyfFs+r  +    kr +r+t++g+Wk tgk ++v+   +
  Gh_D08G1370  11 VGYRFHPTDKELVDHYLWNKILDRDSLV-QAIKEVdSLFNKDPWELPgwSEIQSADQVWYFFSRRGDN----KRVKRTTDKGFWKVTGKPRKVKG--K 101
                  7***********************9777.88****5599********6559999999*******9875....69*******************87..6 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +    kk+Lvfy+gr+p+++ t Wv+hey++
  Gh_D08G1370 102 KGFAAKKSLVFYEGRTPNAKWTPWVIHEYTF 132
                  779**************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-387151IPR003441NAC domain
PROSITE profilePS5100540.779151IPR003441NAC domain
PfamPF023651.8E-2111131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MSSIDGNSHI VGYRFHPTDK ELVDHYLWNK ILDRDSLVQA IKEVDSLFNK DPWELPGWSE  60
IQSADQVWYF FSRRGDNKRV KRTTDKGFWK VTGKPRKVKG KKGFAAKKSL VFYEGRTPNA  120
KWTPWVIHEY TFTSTLVDNR EGIFLCKLKK KEDETANASS SESCQPSLVA DEEIPDVRCL  180
MQSFLKSFLW TDKSIHNHSC FCMIQYSTMF NPDEMLDTLK ERDREHELEV DEQQQPSCLE  240
FTHLQDVTTN CDGLPHLSKE ENDDESWIGY LVDDDEFNPD ELNLGNDCCN LALVDASATC  300
PGEPSRKRSR CEAGVLCGAI EKEECQPMAV SNSMMLDAHG DSKKHQPLAM VNAPNVTSSS  360
VKQDPHGRDR MVSLNNESRE MDIPDVESIV DPHSIVRATR FHNPYYQKLG EQEDDAKRIN  420
KRGKFCRKIA SQDKAIDVKQ HATAVNLPII MESNGKRKTA EHSYRHMRLQ MHLNELSDCD  480
KKSFLHVQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-201213018138Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016693730.10.0PREDICTED: uncharacterized protein LOC107910410 isoform X1
TrEMBLA0A0D2R5370.0A0A0D2R537_GOSRA; Uncharacterized protein
STRINGGorai.004G149000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2081746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.17e-32NAC domain containing protein 69