PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1338
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 455aa    MW: 50731.7 Da    PI: 9.6713
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1338genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-08129171346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE ++l d+++++  + +  Ia +++++Rt +++k+r+++
      Gh_D08G1338 129 KWTKEETDQLFDLCERFDLR-FIIIADRFPTHRTVEELKDRYYS 171
                      8*******************.*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162822.9E-31102176IPR032563DAMP1, SANT/Myb-like domain
SMARTSM007174.7E-8126175IPR001005SANT/Myb domain
SuperFamilySSF466891.06E-6126177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-6128173IPR009057Homeodomain-like
CDDcd116586.41E-19130172No hitNo description
PfamPF054991.4E-6319381IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDAKDILGLP KTPLPIPQEK KSRPQKDSQR KPDGISREVY ALTGGVAPLM PSIDVSQLKR  60
RPPSDEKITW QWLPFTSSAR KDDLQLYHWV RVVNGVPPTG DYSFAKYNKS VDVIRYTDEE  120
YEKYLTDPKW TKEETDQLFD LCERFDLRFI IIADRFPTHR TVEELKDRYY SVSRAILVAR  180
APSPGEVAGH PLVKEPYNVT QETERKRALS MVLSQTKHQE RKDAEVLAEA KRIAESRMAA  240
RAAEEPDLPV PSDVGLESAE GAVGPGDTIS PSNVQAPAAA IAPSTSVIAD NASTLASLRM  300
LRVYLRTYAL EQMVQAASSS AGLRTIKRVE QTLQDLGVNL KPKVPTKAVC AEHLELRKEI  360
LTLLNLQKQL QYKEAEGSSF RDGSYGDMPG TAKRSQRAAD QDRTFVPDTI SFGVIPGDRV  420
VKREQKRKGP GRTSETPSSP AGAHKRPRKM KASDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A6e-21101185491DNA methyltransferase 1-associated protein 1
4iej_A6e-21101185491DNA methyltransferase 1-associated protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1420426VKREQKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.39790.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5269182e-75HQ526918.1 Gossypium herbaceum clone NBRI_A2_3058 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475000.10.0PREDICTED: SWR1-complex protein 4 isoform X1
RefseqXP_012475002.10.0PREDICTED: SWR1-complex protein 4 isoform X1
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A0D2QXN10.0A0A0D2QXN1_GOSRA; Uncharacterized protein
STRINGGorai.004G145300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85432435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]