PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D08G1310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 293aa MW: 33199.8 Da PI: 5.1569 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5e-19 | 76 | 124 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g Gh_D08G1310 76 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 124 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.22E-22 | 75 | 133 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.7E-38 | 75 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.775 | 75 | 132 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-32 | 75 | 133 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-12 | 76 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-12 | 76 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.97E-33 | 76 | 133 | No hit | No description |
PRINTS | PR00367 | 7.4E-12 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MCGGAIISEF IPRKGGRHVT AADIWPNSPF VKINGFCSYR DHSVYHFKRS QPEPPSSLAG 60 DEQVEKKPKR QRKNLYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDREAR 120 KIRGKKAKVN FPNEDDSFST PYNLNRSTPN SNPCVYQQHI NSNYGFNYDL NEIGGYATDP 180 IVISGDENKG SDDQNVNLCY VPVKAEELEE EEKRREPMNK AVSAVGVQEE NNEVEKLSEE 240 LMAYENYMKF YQIPYLDGES PTQNGVAPQD SVVGELWSFD DDGVAAPETS TAM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-22 | 76 | 132 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 2e-21 | 76 | 134 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 71 | KPKRQR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.17766 | 0.0 | ovule| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012474966.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF071-like isoform X1 | ||||
TrEMBL | A0A0D2PBT4 | 0.0 | A0A0D2PBT4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G142800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 8e-36 | ethylene-responsive element binding protein |