PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1289
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 367aa    MW: 41468.3 Da    PI: 5.5694
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1289genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.8e-071153339
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                  r C+ +++  + l+C+ ++  lC +C  e H+       H++
  Gh_D08G1289 11 RRLCDYCNQSTALLYCRADSAKLCFSCDREVHSAnqlftkHSR 53
                 689******99*********************65777777776 PP
2zf-B_box27.94.9e-095395242
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg...Htvvpl 42
                 + + C+ ++e +++lfCe+ q+ +C +C  e H +   H+++p+
  Gh_D08G1289 53 RSQLCDACDESPASLFCETEQSVFCSNCDWERH-RcslHNRRPV 95
                 5689*****************************.6599998875 PP
3CCT62.71.1e-21309351143
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                  Re a++RYkeK+ktR+++K++rYesRKa+AesR R+KGrF+k+
  Gh_D08G1289 309 RETAISRYKEKKKTRRYDKHVRYESRKARAESRTRIKGRFAKN 351
                  99***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.793956IPR000315B-box-type zinc finger
SMARTSM003363.5E-13956IPR000315B-box-type zinc finger
PfamPF006439.6E-61154IPR000315B-box-type zinc finger
CDDcd000217.96E-61244No hitNo description
PROSITE profilePS5011910.315295IPR000315B-box-type zinc finger
PfamPF006439.5E-75495IPR000315B-box-type zinc finger
CDDcd000211.18E-75695No hitNo description
SMARTSM003360.155795IPR000315B-box-type zinc finger
PfamPF062033.3E-16309351IPR010402CCT domain
PROSITE profilePS5101715.071309351IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSDESHTQIQ RRLCDYCNQS TALLYCRADS AKLCFSCDRE VHSANQLFTK HSRSQLCDAC  60
DESPASLFCE TEQSVFCSNC DWERHRCSLH NRRPVEVFTG CPSVSELLSF LGIEDLGNDK  120
ASCWSEDDGF LDFLTWECPL ISGFDGVIVP NDMDHGFKAT DVPPLPKNRN SSCGQHKEEI  180
FHQLHELAKS DPTLTFQKTD LQSLIPETDH FQPASMQTSC NNDAVPVSCP ALETSPLQCL  240
KFNDNVEITN QALLYTEENA RVANTHVDCS RNIDVNDGPE DQQMKPQTGV GTISALPKVA  300
VHELNSQERE TAISRYKEKK KTRRYDKHVR YESRKARAES RTRIKGRFAK NCEPIIISTD  360
AHILEAL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474942.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A0D2R4H80.0A0A0D2R4H8_GOSRA; Uncharacterized protein
STRINGGorai.004G140600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.14e-96B-box type zinc finger protein with CCT domain