PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G1185

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 818aa MW: 89511.2 Da PI: 5.9495

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G1185	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00018	613	651	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i + + eLr ++P++ +k ls Le++++Y+ Lq Gh_D08G1185 613 RQLIQDHIKELRGIIPHS----GKQLSIDHLLERTIKYLLFLQ 651 67799**********9....777*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	3.6E-7	10	48	IPR025610	Transcription factor MYC/MYB N-terminal
Pfam	PF14215	3.6E-15	59	149	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	9.623	600	650	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-5	613	656	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MGEAAMGSAL KQTLKNLCCS NGWCYGVFWR FDPRNSMLLT MEDAYYEQKM GPLVDKMLLK 60 FHILGEGIIG QAAFTGKHQW IFSDSNGKGS DSAGNEKIFQ DESELQVQFS SGIKTIAVIS 120 VGRRGVVQFG STKKILERLE LLAETEKLFY DMGSCHGLTP LEIETCNLDG WFTSFILGQN 180 PTTEQGGCSV EPTGWSCSLQ SLIEPSCSVH DYSMNSVQQN LSHLTSQIQT ISIEAQPISA 240 GKICRVNSLA ANTPCTSEGS ILTSLPGEKG EWDPSIVFPK KDTEQNLQGH STFTSFYSTG 300 ELVDSELHNL DSFGKTKQEQ HSFGTNAGLL DSVISQQRSI EEFNLGDFIT DLSSSFTMDD 360 FSHWFSPLPQ HHIHGAGATT TTDPSCSVGV TSVPSVPIGG DAVINIPVGQ IVNSSKSSIA 420 DAFTSNVEKS TMVHDNGNDL FSGTGMDFRL RKAGKLSENI DMPLLHSANK VVASGMSSSM 480 AGKRKGLFSE LGLEELLGGV SNSSSVAKSS VEDEIFTTRR RKIENSSSNF HLGQLEGLSC 540 SGGGMNLAQH SHTWDKSNDT IFSKEFHLKS QVGLWIDDSY GVKAGNAIVT TAKKPTRKRA 600 KPGESSRPRP KDRQLIQDHI KELRGIIPHS GKQLSIDHLL ERTIKYLLFL QGVTKYADEI 660 KQADEPKLIG QGNRKLLKHN TMSGGATWAF EVGAQSIPIV VKDLNPPGQM LVEMLCEDRG 720 FFLEIAEVIR GFPLNILKGV MELQEDKIWA RFIVEADKQI ERTGIIWSLL PLLQQKDNSG 780 IDCATQPSGD MDGAISLLNN HQQQPFLLRP VSVAETLQ

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MGEAAMGSAL KQTLKNLCCS NGWCYGVFWR FDPRNSMLLT MEDAYYEQKM GPLVDKMLLK  60
FHILGEGIIG QAAFTGKHQW IFSDSNGKGS DSAGNEKIFQ DESELQVQFS SGIKTIAVIS  120
VGRRGVVQFG STKKILERLE LLAETEKLFY DMGSCHGLTP LEIETCNLDG WFTSFILGQN  180
PTTEQGGCSV EPTGWSCSLQ SLIEPSCSVH DYSMNSVQQN LSHLTSQIQT ISIEAQPISA  240
GKICRVNSLA ANTPCTSEGS ILTSLPGEKG EWDPSIVFPK KDTEQNLQGH STFTSFYSTG  300
ELVDSELHNL DSFGKTKQEQ HSFGTNAGLL DSVISQQRSI EEFNLGDFIT DLSSSFTMDD  360
FSHWFSPLPQ HHIHGAGATT TTDPSCSVGV TSVPSVPIGG DAVINIPVGQ IVNSSKSSIA  420
DAFTSNVEKS TMVHDNGNDL FSGTGMDFRL RKAGKLSENI DMPLLHSANK VVASGMSSSM  480
AGKRKGLFSE LGLEELLGGV SNSSSVAKSS VEDEIFTTRR RKIENSSSNF HLGQLEGLSC  540
SGGGMNLAQH SHTWDKSNDT IFSKEFHLKS QVGLWIDDSY GVKAGNAIVT TAKKPTRKRA  600
KPGESSRPRP KDRQLIQDHI KELRGIIPHS GKQLSIDHLL ERTIKYLLFL QGVTKYADEI  660
KQADEPKLIG QGNRKLLKHN TMSGGATWAF EVGAQSIPIV VKDLNPPGQM LVEMLCEDRG  720
FFLEIAEVIR GFPLNILKGV MELQEDKIWA RFIVEADKQI ERTGIIWSLL PLLQQKDNSG  780
IDCATQPSGD MDGAISLLNN HQQQPFLLRP VSVAETLQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9475	1e-94	boll\| ovule\| root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016694815.1	0.0	PREDICTED: transcription factor bHLH157-like isoform X1
TrEMBL	A0A1U8JX46	0.0	A0A1U8JX46_GOSHI; transcription factor bHLH157-like isoform X1
STRING	Gorai.004G130500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15615	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	7e-43	conserved peptide upstream open reading frame 7