PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1162
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 418aa    MW: 46920.6 Da    PI: 8.5539
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1162genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.34.9e-31118206185
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                  f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ 
  Gh_D08G1162 118 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRG 206
                  89***************************966778999*************************************************54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-42109224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.15E-29115206IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-27116217No hitNo description
PROSITE profilePS5086314.692118223IPR003340B3 DNA binding domain
SMARTSM010192.7E-21118220IPR003340B3 DNA binding domain
PfamPF023622.6E-28118212IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDFGSSGREG LCEEEQMGKG KLPFTYSPPS PSSSSSQHKS QLPPLRNPGW EEQPRPIYDN  60
RHHRMTSEWL SYRCQPQQDI NEATTVTSEA DSRRVDSDST LELRTSASAA DIEKEHMFDK  120
VVTPSDVGKL NRLVIPKQHA EKYFPLDSST NEKGLLLNFE DRNGKPWRFR YSYWNSSQSY  180
VMTKGWSRFV KDKKLDAGDI VSFQRGAGEV GKDRLFIDSK RKPDAPTLVS FHPHQHYFSL  240
GRSIPWNPLL MRPPPTGRDH LYLSPVNPIN RRNSYYGGYP TGSNVVNPGD TVGSLFYLRS  300
AVGSGAPQMG MTQRQQQGGV VEPIVFDSVP VVQSKAAPKR MRLFGVNMEC PMPESDECEM  360
LTTSTLAHAT MAPQHPDQPP SSSQHPLQLR LYNGTPLPRT DFLNANKGKA SLSFDLDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-631132233114B3 domain-containing transcription factor NGA1
5os9_B3e-631132233114B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016695490.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
TrEMBLA0A1U8JZ330.0A0A1U8JZ33_GOSHI; B3 domain-containing transcription factor NGA1-like
STRINGGorai.004G128200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-74B3 family protein