PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1106
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 270aa    MW: 29994.4 Da    PI: 9.0952
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1106genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1245e-393190261
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                 ++++l+cprC+st+tkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk++
  Gh_D08G1106 31 NDQTLNCPRCNSTKTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRA 90
                 6899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-272787IPR003851Zinc finger, Dof-type
PfamPF027013.4E-333289IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0123589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDSAQRPQGI EVVKPMEASR GMVERRTRPQ NDQTLNCPRC NSTKTKFCYY NNYSLSQPRY  60
FCKTCRRYWT EGGSLRNVPV GGGSRKNKRA LSSSSPPRPS ASSKKLGDLT TPPTPQNPKI  120
HEGQDLNLAY PPPTEDYNSL PKFVEVPYSH KSDHRNSTSS STHLNAMELL KTGINSRGLS  180
SFMSMSVSDS NTVYSSGFPM QDFKPTLNFS LDGLETGYGN LQGVEESGAR LFFPMEELKL  240
VPSNANELEQ NRGQGESTGY WNGMLGGGHW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.253190.0boll| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272151e-122HQ527215.1 Gossypium herbaceum clone NBRI_B_EYI1BW404H55EM simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016696456.10.0PREDICTED: dof zinc finger protein DOF1.8-like isoform X1
TrEMBLA0A2P5SV490.0A0A2P5SV49_GOSBA; Uncharacterized protein
STRINGGorai.004G122800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34332761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.12e-44Dof family protein