PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G0923
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 368aa    MW: 40676.5 Da    PI: 6.3896
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G0923genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.4e-072061437
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg........H 37
                 ++C+++++  + +fC++++ ++C +C + +H+         H
  Gh_D08G0923 20 KTCDTCKSAAAAIFCRSDSAFMCLSCDSRIHSAndklvscrH 61
                 79*****************************65655555555 PP
2zf-B_box27.37.4e-0964109342
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   ++C+ +e+ ++   C+ +   lC  C + +H+       H++vp+
  Gh_D08G0923  64 VWMCEVCEQAPAAVTCKADAAALCVACDSDIHSAnplarrHERVPV 109
                  689*****************************66899999*99986 PP
3CCT69.86.7e-24291335145
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                  Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++e
  Gh_D08G0923 291 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRNE 335
                  9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.6981766IPR000315B-box-type zinc finger
SMARTSM003365.4E-41759IPR000315B-box-type zinc finger
CDDcd000218.83E-72266No hitNo description
PROSITE profilePS5011910.80862109IPR000315B-box-type zinc finger
SMARTSM003363.5E-1562109IPR000315B-box-type zinc finger
PfamPF006436.3E-764109IPR000315B-box-type zinc finger
CDDcd000211.68E-965109No hitNo description
PfamPF062035.6E-18291333IPR010402CCT domain
PROSITE profilePS5101716.817291333IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MVIDTTNVKG LTGRWGMAAK TCDTCKSAAA AIFCRSDSAF MCLSCDSRIH SANDKLVSCR  60
HERVWMCEVC EQAPAAVTCK ADAAALCVAC DSDIHSANPL ARRHERVPVQ PFFDSADSIV  120
KSSSFSFLVP TDPNTGSNCQ QEDVETGSWL LPNPKLTMET NQVKTGDFFF SDMDPFIDFE  180
YQDSFQQHDG AMDSVVPVQT KPATISMINN ENCFDVDFCR SKFPTFSYQT KSQSHSVSSS  240
SLEVGVVPDG NSVSDISYTL GRTMGDPSAP IWAATANNQA PPQAQVGGMD REARVLRYRE  300
KRKNRKFEKT IRYASRKAYA ESRPRIKGRF AKRNETDNEV DHMYNSASSA ATAAAFMYDN  360
QYGIVPSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.11310.0root| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2020130.0KM202013.1 Gossypium hirsutum cultivar acc. TM-1 CONSTANS-like 7 protein gene, complete cds.
GenBankKM2020150.0KM202015.1 Gossypium hirsutum cultivar ZMS12 CONSTANS-like 7 protein gene, complete cds.
GenBankKM2020170.0KM202017.1 Gossypium hirsutum cultivar SM3 CONSTANS-like 7 protein gene, complete cds.
GenBankKM2020190.0KM202019.1 Gossypium hirsutum cultivar JM CONSTANS-like 7 protein gene, complete cds.
GenBankKM2020270.0KM202027.1 Gossypium hirsutum cultivar Richmondii CONSTANS-like 7 protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016719123.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
SwissprotQ9FHH81e-127COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A0D3R3810.0A0A0D3R381_GOSHI; CONSTANS-like 7 protein
STRINGGorai.004G102000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-121CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Zhang R, et al.
    Molecular evolution and phylogenetic analysis of eight COL superfamily genes in group I related to photoperiodic regulation of flowering time in wild and domesticated cotton (Gossypium) species.
    PLoS ONE, 2015. 10(2): p. e0118669
    [PMID:25710777]