PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D08G0898 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 114aa MW: 12337.7 Da PI: 6.9276 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 31.4 | 4.3e-10 | 1 | 21 | 36 | 56 |
G2-like 36 mkvkgLtlehvkSHLQkYRla 56 m+v++Lt+++vkSHLQkYRl+ Gh_D08G0898 1 MQVDSLTNDEVKSHLQKYRLH 21 99*****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-9 | 1 | 24 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MQVDSLTNDE VKSHLQKYRL HTRRLPATTI TTTPANQLGL VLGGGHAWMC QDQFGESSKG 60 SSSQSGSPQG PLQLATNTGG TSTTACESIE DDEDAKFVCY SWKSHVQKPI KNNV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.688 | 1e-173 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX964612 | 2e-51 | JX964612.1 Gossypium hirsutum clone NBRI_TRANS-881 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012463947.1 | 1e-65 | PREDICTED: uncharacterized protein LOC105783193 | ||||
Swissprot | Q9FX84 | 2e-14 | HHO6_ARATH; Transcription factor HHO6 | ||||
TrEMBL | A0A2P5SC94 | 2e-78 | A0A2P5SC94_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G158700.1 | 2e-56 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20696 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 4e-08 | G2-like family protein |
Publications ? help Back to Top | |||
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