PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G0783

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 966aa MW: 105878 Da PI: 7.192

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G0783	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.3	4.7e-07	61	117	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++++e +e++++ g+t +qV+ +F +R++ +k Gh_D08G0783 61 KRPRDLLNPKAVKYMQAVFSIKDAITKKESREISAQFGVTVTQVRDFFNSQRTRVRK 117 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.641	58	118	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-7	60	122	IPR009057	Homeodomain-like
SMART	SM00389	5.2E-5	60	122	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-4	61	117	IPR001356	Homeobox domain
CDD	cd00086	1.01E-5	61	118	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.2E-7	61	128	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	3.7E-5	218	310	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	3.14E-5	219	309	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 966 aa Download sequence Send to blast
MDVLKENLAE LEIGSTVESI QKFIEIQREL FHSQIDQLQN VVVTQCKLTG VNPLAQEMVR 60 KRPRDLLNPK AVKYMQAVFS IKDAITKKES REISAQFGVT VTQVRDFFNS QRTRVRKQVR 120 LSREKALRSN ACKEAEDGVL PTGSEAVIPV EPVPLNSVGP VSSEEAPSCS TQDDSLTGID 180 ELDKHFVENI FSKMHKEETF SGQVKLMEWT LQILNPSVLY WFLNKGGVMI LATWLSQAAV 240 EEQTTVVLII LKVLSHLPLQ KALPEHMSAI LQSVNKLCLY RFSDISNRAR LLISRWSKMF 300 ARSQAAKKPN GLRSSTETQN EMLLKQSISE IMGHGSWQSN VYNSEGTLAT SNVRKESPQV 360 LKLLPASMDD SAKKNLLGVS SSHSRERRRV QLVEQPGQKV AGKNSQTTRP VPISQSRPMS 420 ADDIQKAKMR ALYMQSKHGK TGSSSNGMNE VKSEGLNKSS PSKASFSRPV SKVPSHPAEE 480 QKKPVVLPPK TSSRVETSLD PKQPVASKES PWEKCQKVKI PWHIPPEVKI NDLWSVGAGE 540 SSKEVHVQKN RNRRERETFY YTNQEIPSNP KEPWDREMDH DDSLTPEIPT EQPPDNETET 600 QVTHGEHVNG AATLEPSTSQ TGGAVSAEPD LELLAVLLKN PALVFALTSG QAGNLTSEET 660 VKLLDMIKAG GADTGNNVEE KVEVSLPSPT PSTNPGTSGW RPEAVRNPFS QHSQMGNRVA 720 QASVGVVTPI PVAERLSATG MAAPQQEANG LSLAQQLAAA MAELLPQSNA TTLDKRHSPN 780 VAFSNHGHPS NLPASDIALT MKNPSLVNSL TNSSAAAGPS MWVETMNVKT AAISMAPHIP 840 EKVQTSFSPS PLMPTLTQLQ PQVPHASDPY STRPPVGNLG PMPDPWRGRQ SLGSNLHSQA 900 NQNNYNASSF GGSMHPQLRT DPPREGKEYA GNEELIGHHG KEIHLGIETR TDREIDGVTE 960 DDDEAG

Sequence ? help Back to Top

Protein Sequence Length: 966 aa Download sequence Send to blast

MDVLKENLAE LEIGSTVESI QKFIEIQREL FHSQIDQLQN VVVTQCKLTG VNPLAQEMVR  60
KRPRDLLNPK AVKYMQAVFS IKDAITKKES REISAQFGVT VTQVRDFFNS QRTRVRKQVR  120
LSREKALRSN ACKEAEDGVL PTGSEAVIPV EPVPLNSVGP VSSEEAPSCS TQDDSLTGID  180
ELDKHFVENI FSKMHKEETF SGQVKLMEWT LQILNPSVLY WFLNKGGVMI LATWLSQAAV  240
EEQTTVVLII LKVLSHLPLQ KALPEHMSAI LQSVNKLCLY RFSDISNRAR LLISRWSKMF  300
ARSQAAKKPN GLRSSTETQN EMLLKQSISE IMGHGSWQSN VYNSEGTLAT SNVRKESPQV  360
LKLLPASMDD SAKKNLLGVS SSHSRERRRV QLVEQPGQKV AGKNSQTTRP VPISQSRPMS  420
ADDIQKAKMR ALYMQSKHGK TGSSSNGMNE VKSEGLNKSS PSKASFSRPV SKVPSHPAEE  480
QKKPVVLPPK TSSRVETSLD PKQPVASKES PWEKCQKVKI PWHIPPEVKI NDLWSVGAGE  540
SSKEVHVQKN RNRRERETFY YTNQEIPSNP KEPWDREMDH DDSLTPEIPT EQPPDNETET  600
QVTHGEHVNG AATLEPSTSQ TGGAVSAEPD LELLAVLLKN PALVFALTSG QAGNLTSEET  660
VKLLDMIKAG GADTGNNVEE KVEVSLPSPT PSTNPGTSGW RPEAVRNPFS QHSQMGNRVA  720
QASVGVVTPI PVAERLSATG MAAPQQEANG LSLAQQLAAA MAELLPQSNA TTLDKRHSPN  780
VAFSNHGHPS NLPASDIALT MKNPSLVNSL TNSSAAAGPS MWVETMNVKT AAISMAPHIP  840
EKVQTSFSPS PLMPTLTQLQ PQVPHASDPY STRPPVGNLG PMPDPWRGRQ SLGSNLHSQA  900
NQNNYNASSF GGSMHPQLRT DPPREGKEYA GNEELIGHHG KEIHLGIETR TDREIDGVTE  960
DDDEAG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.14408	0.0	ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems.
Uniprot	TISSUE SPECIFICITY: Expressed in shoot apex, root apex, leaf primordia and floral buds.

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016697546.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS-like isoform X2
Swissprot	Q38796	1e-168	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A1U8K4T5	0.0	A0A1U8K4T5_GOSHI; homeobox protein LUMINIDEPENDENS-like isoform X2
STRING	Gorai.004G088100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10876	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-165	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]