PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G0758
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 624aa    MW: 70310.7 Da    PI: 8.8502
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G0758genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3651.2e-2077179199
                  EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  f k+ltpsd  ++g +++pk++a++         +  +  +++l  +d+ g  W +++ +r++++r +lt+GW+ Fv +++L +gD+++F +   +++
  Gh_D08G0758  77 FSKKLTPSDIKTHGGFSIPKRHANDGclplldmsQ--EIPQQELLATDLLGHPWYFRHVFRGYPKRNLLTTGWSTFVTSKKLAAGDSFIFLR--GENG 170
                  88*********************777*****9643..444569************************************************4..3777 PP

                  ..EEEEE-S CS
           B3  91 elvvkvfrk 99 
                  e+ v+v+r+
  Gh_D08G0758 171 EFGVGVRRS 179
                  779999985 PP
2Auxin_resp94.22e-31205287183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a ha++t+s+F+v+Y+P+a +seF+ +++++ ka++  ++ G+R +m++e+ +s e+r  Gt++g++dldp+rW+nSkWr++k
  Gh_D08G0758 205 AFHAFATRSIFNVYYRPWARSSEFITPLDQYIKAVQFDYCFGTRCRMRVEGGESGEQRSLGTIIGTEDLDPIRWQNSKWRCVK 287
                  6799*****************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-3070181IPR015300DNA-binding pseudobarrel domain
CDDcd100173.94E-1775178No hitNo description
SuperFamilySSF1019366.02E-2575178IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-1177180IPR003340B3 DNA binding domain
PROSITE profilePS5086312.09777180IPR003340B3 DNA binding domain
PfamPF023628.8E-1877178IPR003340B3 DNA binding domain
PfamPF065071.6E-27205287IPR010525Auxin response factor
PROSITE profilePS5174519.662525608IPR000270PB1 domain
SuperFamilySSF542772.5E-8527603No hitNo description
PfamPF023095.5E-7565612IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MEQVEAYMSE DGTMEMPIYN LPWKILCRVL HVELKVERDT DEIFAEIILL PEAEQDEQRM  60
EHRYYRASPR ENYSRYFSKK LTPSDIKTHG GFSIPKRHAN DGCLPLLDMS QEIPQQELLA  120
TDLLGHPWYF RHVFRGYPKR NLLTTGWSTF VTSKKLAAGD SFIFLRGENG EFGVGVRRSM  180
TKLLNSPSPS IISAHSVRHG ILASAFHAFA TRSIFNVYYR PWARSSEFIT PLDQYIKAVQ  240
FDYCFGTRCR MRVEGGESGE QRSLGTIIGT EDLDPIRWQN SKWRCVKVKW DPTASSVLLP  300
KRVCPWSIDL TEFTKKKKAS TLHHQKRARP NNASSPEFSS LLMDGMLHGT AKNQSQSSSG  360
VLQGQEDSAT CVNQSSVLQQ SLPHLLPQDP GSASMQQQMH KQLQIQIPTC DRFYQCSSST  420
GHFSGRKVPG LCNGLSTISS NRVHDDARAT KNGTSLSRPN GSHRCMVFGV NLFNGSPKLP  480
SPQVLTSSEV QRLCSTPLTS QSSVSIASKG ISSKQCNNCC SVGDRTCTKV LKYGTNLGRS  540
VDLYRFNGYK GLILELDHMF DFNGKLIDGS SGWHITYTDE DGDMMLIGDP YPWQKFQHEV  600
RRMVIRPKEE INRLNPSSPS SASY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-98130949353Auxin response factor 1
4ldw_A2e-98130949353Auxin response factor 1
4ldw_B2e-98130949353Auxin response factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5894772e-45JX589477.1 Gossypium hirsutum clone NBRI_GE24193 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016690492.10.0PREDICTED: auxin response factor 23-like
TrEMBLA0A1U8JJL80.0A0A1U8JJL8_GOSHI; Auxin response factor
STRINGGorai.004G085400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157971016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-112auxin response factor 2