PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D08G0631 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 27707.2 Da PI: 7.1649 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.8e-18 | 101 | 152 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g ++AeIrdp+ n ++r++lg++ t+e Aa a+++a+ k++g+ Gh_D08G0631 101 HYRGVRRRP-WGTYAAEIRDPKRN--SARIWLGTYETPESAALAYDRAAFKFRGA 152 6********.**********9655..5*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-22 | 101 | 160 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.828 | 101 | 159 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.45E-29 | 101 | 161 | No hit | No description |
Pfam | PF00847 | 7.0E-13 | 101 | 151 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 101 | 160 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-33 | 101 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-12 | 102 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-12 | 141 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MYCDSVSEFD LRLLESIRRY LLEDDFDTNP GQVVENVDKN GLHVHDDAIK VDQWIIFDQS 60 FDAAEKRVGV NNASFPSFEV IFQKETGAAV PKPHALPKEV HYRGVRRRPW GTYAAEIRDP 120 KRNSARIWLG TYETPESAAL AYDRAAFKFR GAKAKLNFPH LIGSNQVEPA RVNSNKRKSP 180 VPSSTSSSVQ LPSSPLFTLT SDDETPKSKR KRSEIKFSSI ETEFEGDMHQ LMMQTEFFQT 240 LIY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-28 | 98 | 166 | 2 | 70 | ATERF1 |
3gcc_A | 8e-28 | 98 | 166 | 2 | 70 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016704588.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
TrEMBL | A0A1U8KUA3 | 0.0 | A0A1U8KUA3_GOSHI; ethylene-responsive transcription factor 2-like | ||||
STRING | Gorai.004G070700.1 | 1e-180 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 3e-31 | ethylene-responsive element binding factor 13 |