PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G0629
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 228aa    MW: 25386.5 Da    PI: 5.414
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G0629genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-19100150356
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g ++AeIrdp+ ng  +r++lg++ t+e+Aa a+++a+ +++g+
  Gh_D08G0629 100 YRGVRRRP-WGTYAAEIRDPKRNG--ARIWLGTYETPEGAALAYDRAAFNMRGA 150
                  9*******.**********98776..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-1399149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-3199158IPR001471AP2/ERF domain
CDDcd000185.58E-3099159No hitNo description
PROSITE profilePS5103223.20999157IPR001471AP2/ERF domain
SMARTSM003803.6E-3499163IPR001471AP2/ERF domain
PRINTSPR003672.5E-12100111IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-21100158IPR016177DNA-binding domain
PRINTSPR003672.5E-12139159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MYCDSASNFD LSLLDSIRQY LLEDDFDTIP GQVVENLPKS ELHDDAINVD QWIIFDQLFE  60
AAEEKVAVNN VSFPSLEVTS EMETTAAVPK PQAAPKKVNY RGVRRRPWGT YAAEIRDPKR  120
NGARIWLGTY ETPEGAALAY DRAAFNMRGA KAKLNFPHLI GSNQVEPVRV SSNKRRSPEP  180
SSACSSAQSP SSPSSTLTSD DVTPKSKRRS VMNCFSKTEF AVDMYQLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2896164270ATERF1
3gcc_A2e-2896164270ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5864362e-77JX586436.1 Gossypium hirsutum clone NBRI_GE20263 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704050.11e-169PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
TrEMBLA0A2P5RD411e-169A0A2P5RD41_GOSBA; Uncharacterized protein
STRINGGorai.004G070500.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.15e-41ethylene-responsive element binding factor 13