PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D08G0565 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 28346.7 Da PI: 6.515 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31 | 4.6e-10 | 168 | 211 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq Gh_D08G0565 168 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 211 6779*******************5.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.71E-14 | 159 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.12E-12 | 159 | 215 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-12 | 159 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.408 | 161 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.9E-12 | 167 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-7 | 168 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MALAKDPICS VQTSTLLEDG SDGFIFQAVN YQPEQPHSLI NFKDSGYDNF IHGTNGSLLS 60 FEQSEKGRQH TTCLRTSGYK HGHSMVDQWD PRAVEDFSCF ETASNGDWLY YDEAVFADSS 120 SIQDPGSPAA DLKRPHMGGS NQALKKQCTN ETKKGKTKSE PSKEPQSIAA KNRRERISER 180 LKILQELVPN GSKVDLVTML EKAISYVKFL QLQVKVLATD EFWPVQGGKA PDISQVRQAI 240 DAILSSQKQR NSTSE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016703875.1 | 0.0 | PREDICTED: putative transcription factor bHLH086 | ||||
Swissprot | Q9FJ00 | 5e-59 | BH086_ARATH; Putative transcription factor bHLH086 | ||||
TrEMBL | A0A1U8KN63 | 0.0 | A0A1U8KN63_GOSHI; putative transcription factor bHLH086 | ||||
STRING | Gorai.004G064400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4260 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37800.1 | 2e-61 | RHD SIX-LIKE 1 |
Publications ? help Back to Top | |||
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